SRR1546950_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546950_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	972221
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5374	0.5527549806062613	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3040	0.31268610737682073	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTAG	45	3.8380676E-10	45.0	1
TATGCGA	105	0.0	45.0	2
GATTCGC	20	7.032751E-4	45.0	9
CAATCGA	20	7.032751E-4	45.0	2
CGTTTTT	4690	0.0	43.128998	1
CGTTAGA	80	0.0	42.1875	2
TATAGCG	65	0.0	41.53846	1
CGTAAGA	115	0.0	41.086956	2
CGGTCTA	105	0.0	40.714287	31
GACCGAT	260	0.0	40.673077	9
CTATGCG	50	1.0804797E-9	40.500004	1
GTATGCG	50	1.0804797E-9	40.500004	1
TAAGCGA	95	0.0	40.263157	2
ACGAGGT	140	0.0	40.17857	5
AGGGGAA	6940	0.0	39.488472	8
GAGCGAT	680	0.0	39.375004	7
CGATAAG	40	3.4574987E-7	39.375	10
GTTTTTA	3425	0.0	39.28467	2
GAGGGGA	6955	0.0	39.2092	7
TAGAGTA	415	0.0	39.036144	5