##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546950_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 972221 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.69338658597171 31.0 31.0 33.0 30.0 34.0 2 32.05154177908109 33.0 31.0 34.0 30.0 34.0 3 32.072474262539075 33.0 31.0 34.0 30.0 34.0 4 35.834590077770386 37.0 35.0 37.0 35.0 37.0 5 35.826516810478275 37.0 35.0 37.0 35.0 37.0 6 35.872698697106934 37.0 35.0 37.0 35.0 37.0 7 36.11176882622367 37.0 35.0 37.0 35.0 37.0 8 13.320892060550019 0.0 0.0 36.0 0.0 37.0 9 24.98140237662013 18.0 17.0 39.0 17.0 39.0 10 32.525357917592814 32.0 32.0 37.0 27.0 39.0 11 35.477352371528696 37.0 34.0 37.0 32.0 39.0 12 36.60165127064731 37.0 35.0 39.0 33.0 39.0 13 36.8559473617624 39.0 35.0 39.0 33.0 39.0 14 38.025462317724056 40.0 37.0 41.0 33.0 41.0 15 38.31209159234372 40.0 37.0 41.0 33.0 41.0 16 38.38898871758582 40.0 37.0 41.0 34.0 41.0 17 38.374085727422056 40.0 37.0 41.0 34.0 41.0 18 38.315199939108496 40.0 37.0 41.0 34.0 41.0 19 38.28967693559386 40.0 37.0 41.0 34.0 41.0 20 38.258564667909866 40.0 37.0 41.0 34.0 41.0 21 38.18216022900143 40.0 37.0 41.0 34.0 41.0 22 38.1298418775155 40.0 37.0 41.0 33.0 41.0 23 38.00730698061449 40.0 36.0 41.0 33.0 41.0 24 37.89911964460755 40.0 36.0 41.0 33.0 41.0 25 37.795962029209406 40.0 36.0 41.0 33.0 41.0 26 37.71852798900662 40.0 35.0 41.0 33.0 41.0 27 37.668182440000784 40.0 35.0 41.0 33.0 41.0 28 37.603845216262556 40.0 35.0 41.0 33.0 41.0 29 37.608559165045804 40.0 36.0 41.0 33.0 41.0 30 37.51544967656531 40.0 36.0 41.0 33.0 41.0 31 37.43741083560219 40.0 35.0 41.0 33.0 41.0 32 37.28386241399846 40.0 35.0 41.0 32.0 41.0 33 37.12786290359908 40.0 35.0 41.0 32.0 41.0 34 36.95298702661226 40.0 35.0 41.0 31.0 41.0 35 36.804002382174424 40.0 35.0 41.0 31.0 41.0 36 36.68531434725232 40.0 35.0 41.0 31.0 41.0 37 36.618849006553035 40.0 35.0 41.0 30.0 41.0 38 36.522845114433856 40.0 35.0 41.0 30.0 41.0 39 36.4406868397206 39.0 35.0 41.0 30.0 41.0 40 36.339595626920214 39.0 35.0 41.0 30.0 41.0 41 36.282152926135105 39.0 35.0 41.0 30.0 41.0 42 36.22375159557343 39.0 35.0 41.0 30.0 41.0 43 36.14153777793321 39.0 35.0 41.0 29.0 41.0 44 35.97042853425302 39.0 35.0 40.0 29.0 41.0 45 35.86592451716225 39.0 35.0 40.0 28.0 41.0 46 35.844149632645255 39.0 35.0 40.0 29.0 41.0 47 35.80614284200814 39.0 35.0 40.0 28.0 41.0 48 35.72528365464231 38.0 35.0 40.0 28.0 41.0 49 35.63124330784873 38.0 35.0 40.0 28.0 41.0 50 35.53005335206707 38.0 35.0 40.0 27.0 41.0 51 35.156554939669064 38.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 0.0 13 4.0 14 8.0 15 18.0 16 46.0 17 101.0 18 293.0 19 535.0 20 984.0 21 1659.0 22 2748.0 23 4181.0 24 6476.0 25 9689.0 26 12632.0 27 13763.0 28 14421.0 29 15678.0 30 18971.0 31 23903.0 32 32085.0 33 43869.0 34 66364.0 35 100267.0 36 104136.0 37 177527.0 38 225323.0 39 96526.0 40 13.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.13485308381531 22.85941159468886 28.451041481309293 15.554693840186543 2 33.36309337074595 24.07940169981928 29.771317426799047 12.786187502635718 3 29.686460177264223 24.62526524319059 32.73535543873255 12.952919140812636 4 26.17871862467484 27.25100568697858 31.9632058966017 14.60706979174488 5 22.942108841508258 31.326930810998732 31.097353379529963 14.633606967963045 6 20.680894570267462 40.58573102206186 28.18309828732356 10.550276120347123 7 86.34456569031114 3.753261861243483 8.076455867544519 1.8257165809008447 8 32.81640696919733 63.295073856664274 2.955706572888263 0.9328126012501273 9 83.04253868204863 4.505971378935448 9.708286490417303 2.743203448598621 10 43.185551433264656 24.839002654746196 19.593590346227863 12.381855565761283 11 37.78451607196306 23.239880644421383 23.008863211142323 15.966740072473234 12 33.55636218514103 22.928017395221868 26.76058221330335 16.755038206333744 13 23.474498082226162 30.749695799617577 27.925543677826337 17.850262440329924 14 18.826686524977347 33.42871631038622 29.656117281976012 18.088479882660423 15 18.687006349379413 24.725756798094263 39.88753585861651 16.699700993909822 16 21.260701013452703 22.07142203264484 38.63370571094432 18.034171242958134 17 21.695170131071023 21.4376155215738 29.29477968486589 27.572434662489293 18 23.83316139026003 25.021780027380608 31.78793710483522 19.357121477524142 19 26.770147939614553 25.85965536642389 27.432651629619194 19.937545064342366 20 29.0137736173154 25.03278575550209 26.462398981301575 19.491041645880927 21 25.29260322498691 26.70431928542996 28.87399058444531 19.129086905137825 22 24.038464505498236 22.96412029775123 29.695305902670277 23.302109294080257 23 22.13251925230992 27.42442304784612 28.529830151786477 21.913227548057492 24 22.23784509900527 24.486922212130782 34.23552875323615 19.039703935627806 25 21.385878313675594 25.34331186016348 32.04168599526239 21.22912383089853 26 19.842402087591196 30.445443988558157 28.186492577304957 21.525661346545693 27 20.121145295154086 29.252711060551047 31.00221040277879 19.623933241516074 28 18.177657137626117 27.560194647101845 35.2129814106052 19.04916680466684 29 19.466664472378195 25.937106892362948 34.269677367594404 20.32655126766445 30 21.46908984685581 26.545199085393133 32.29903489021529 19.686676177535766 31 27.03140541090966 25.403894793467742 27.67662907919084 19.88807071643176 32 26.68837640824463 26.836902309248618 27.553920353499873 18.92080092900688 33 24.88148270814969 27.2503885433456 27.336994366507206 20.53113438199751 34 20.691180297483804 27.64926904479537 29.630402963935154 22.02914769378567 35 20.877249102827445 27.325474352024898 29.766894564096024 22.030381981051633 36 26.10568996143881 27.040251136315714 27.186719891876436 19.66733901036904 37 21.64651864133772 29.881580422558248 27.833074990151417 20.638825945952618 38 21.60784430700427 31.00210754550663 25.46211200951224 21.927936137976857 39 21.57122711811409 28.84621912096118 26.7781708068433 22.80438295408143 40 23.055251840888026 25.96343835403679 27.372788697220074 23.608521107855108 41 20.056448070963288 25.735609496194794 28.44219575590324 25.76574667693868 42 22.689902810163534 27.033668270897255 26.399964617098377 23.876464301840837 43 22.33031378668019 26.751222201536486 26.83793088197025 24.080533129813077 44 21.560324247264766 28.49640153833336 28.161909689257897 21.781364525143974 45 21.021763570217058 30.563626994273935 25.970535505816066 22.44407392969294 46 22.683114230200747 28.976127855703588 27.322697205676487 21.018060708419174 47 22.532736898297813 27.50886886829229 27.541988909928918 22.41640532348098 48 22.5353083301019 26.118135691370583 29.43672272045142 21.909833258076095 49 21.701752996489482 25.316671826673154 30.07526066604198 22.906314510795386 50 20.546665830094184 29.02591077543069 28.495372965611725 21.932050428863395 51 19.920162185346747 30.03926062078478 27.2239542243996 22.816622969468874 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 530.0 1 948.0 2 1366.0 3 7798.0 4 14230.0 5 9797.5 6 5365.0 7 5310.0 8 5255.0 9 5447.0 10 5639.0 11 5540.0 12 5441.0 13 5283.0 14 5125.0 15 4945.5 16 4766.0 17 4389.0 18 4012.0 19 3940.0 20 3868.0 21 4055.0 22 4242.0 23 4922.5 24 5603.0 25 6328.5 26 8359.0 27 9664.0 28 11674.5 29 13685.0 30 15432.5 31 17180.0 32 19002.0 33 20824.0 34 23996.5 35 27169.0 36 30787.5 37 34406.0 38 41468.0 39 48530.0 40 57382.5 41 66235.0 42 71218.0 43 76201.0 44 77084.5 45 77968.0 46 78540.5 47 79113.0 48 77226.5 49 75340.0 50 72442.5 51 69545.0 52 65038.0 53 60531.0 54 55902.0 55 51273.0 56 47608.5 57 43944.0 58 41089.5 59 38235.0 60 34268.0 61 30301.0 62 25964.0 63 21627.0 64 18203.0 65 14779.0 66 11983.5 67 9188.0 68 7393.0 69 5598.0 70 4703.5 71 3809.0 72 3038.0 73 2267.0 74 1697.0 75 879.5 76 632.0 77 479.5 78 327.0 79 239.0 80 151.0 81 95.0 82 39.0 83 30.0 84 21.0 85 16.0 86 11.0 87 7.0 88 3.0 89 1.5 90 0.0 91 0.5 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 972221.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.898711892632356 #Duplication Level Percentage of deduplicated Percentage of total 1 72.45782090151023 24.5622679510825 2 7.784908834234017 5.277967633642146 3 3.5389790637347174 3.5990049502680295 4 2.1816319497159533 2.9581805167673156 5 1.7073055237835637 2.8937729031719406 6 1.4230844822741755 2.8944438518092888 7 1.2227667181586714 2.901515168353227 8 1.0526154289256007 2.8545845727110852 9 0.9249059366969887 2.821780788828883 >10 7.632374502393932 46.162074946771604 >50 0.05809464653419609 1.2654235506928775 >100 0.01429538364303768 0.810717277522587 >500 6.083141974956236E-4 0.13073756935178668 >1k 3.041570987478118E-4 0.3134402293607504 >5k 3.041570987478118E-4 0.5540880896660108 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5374 0.5527549806062613 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3040 0.31268610737682073 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.010182869944179359 0.0 2 0.0 0.0 0.0 0.03270861254797006 0.0 3 0.0 0.0 0.0 0.05112006426522365 0.0 4 0.0 0.0 0.0 0.08125724500910801 0.0 5 0.0 0.0 0.0 0.15624019641624692 0.0 6 0.0 0.0 0.0 0.2534403186106863 0.0 7 0.0 0.0 0.0 0.3185489718901361 0.0 8 0.0 0.0 0.0 0.4592577202097054 0.0 9 0.0 0.0 0.0 0.6295893629123419 0.0 10 0.0 0.0 0.0 0.8917725496569195 0.0 11 0.0 0.0 0.0 1.1095213948268963 0.0 12 0.0 0.0 0.0 1.3025844946776504 0.0 13 0.0 0.0 0.0 1.3886760314784397 0.0 14 0.0 0.0 0.0 1.4278646521727056 0.0 15 0.0 0.0 0.0 1.475590426456536 0.0 16 0.0 0.0 0.0 1.5757734095437148 0.0 17 0.0 0.0 0.0 1.6841849744039679 0.0 18 0.0 0.0 0.0 1.834459449034736 0.0 19 0.0 0.0 0.0 1.9152024076830267 0.0 20 0.0 0.0 0.0 2.011373957155832 0.0 21 0.0 0.0 0.0 2.129454105599447 0.0 22 0.0 0.0 0.0 2.2461971095049376 0.0 23 0.0 0.0 0.0 2.3824829951214794 0.0 24 0.0 0.0 0.0 2.486677411823032 0.0 25 0.0 0.0 0.0 2.5875803958153547 0.0 26 0.0 0.0 0.0 2.6816947998448915 0.0 27 0.0 0.0 0.0 2.7740606302476496 0.0 28 0.0 0.0 0.0 2.88329505328521 0.0 29 0.0 0.0 0.0 2.9969523390257975 0.0 30 0.0 0.0 0.0 3.133341081914503 0.0 31 0.0 0.0 0.0 3.24967265673134 0.0 32 0.0 0.0 0.0 3.370427094251204 0.0 33 0.0 0.0 0.0 3.4880958136061655 0.0 34 0.0 0.0 0.0 3.613581685645548 0.0 35 1.0285727216342786E-4 0.0 0.0 3.761181871200067 0.0 36 1.0285727216342786E-4 0.0 0.0 3.8879020305054097 0.0 37 1.0285727216342786E-4 0.0 0.0 4.018222194336473 0.0 38 1.0285727216342786E-4 0.0 0.0 4.175285248930027 0.0 39 1.0285727216342786E-4 0.0 0.0 4.376885502370346 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGTTAG 45 3.8380676E-10 45.0 1 TATGCGA 105 0.0 45.0 2 GATTCGC 20 7.032751E-4 45.0 9 CAATCGA 20 7.032751E-4 45.0 2 CGTTTTT 4690 0.0 43.128998 1 CGTTAGA 80 0.0 42.1875 2 TATAGCG 65 0.0 41.53846 1 CGTAAGA 115 0.0 41.086956 2 CGGTCTA 105 0.0 40.714287 31 GACCGAT 260 0.0 40.673077 9 CTATGCG 50 1.0804797E-9 40.500004 1 GTATGCG 50 1.0804797E-9 40.500004 1 TAAGCGA 95 0.0 40.263157 2 ACGAGGT 140 0.0 40.17857 5 AGGGGAA 6940 0.0 39.488472 8 GAGCGAT 680 0.0 39.375004 7 CGATAAG 40 3.4574987E-7 39.375 10 GTTTTTA 3425 0.0 39.28467 2 GAGGGGA 6955 0.0 39.2092 7 TAGAGTA 415 0.0 39.036144 5 >>END_MODULE