SRR1546949_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546949_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	705922
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12690	1.7976490320460332	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7028	0.9955774150685203	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	916	0.12975937851490674	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCTATA	25	3.88927E-5	45.000004	20
ACGTGCG	35	1.2110286E-7	45.000004	1
GTATCGG	25	3.88927E-5	45.000004	1
GCGGAGT	35	1.2110286E-7	45.000004	4
TCTGCGA	40	6.8084773E-9	45.0	2
ATTACGC	20	7.0314354E-4	45.0	22
CACGACG	105	0.0	45.0	26
ATCGTAG	20	7.0314354E-4	45.0	1
TAGCACG	20	7.0314354E-4	45.0	1
TCTACGA	20	7.0314354E-4	45.0	2
ATCGGTT	20	7.0314354E-4	45.0	39
GACGAAC	20	7.0314354E-4	45.0	33
TAAGCGA	40	6.8084773E-9	45.0	2
GCGTAAG	20	7.0314354E-4	45.0	1
CGTGCGG	30	2.1643064E-6	44.999996	2
CGTTTTT	7770	0.0	44.247105	1
CGACGGT	120	0.0	43.124996	28
CGAGGTT	95	0.0	42.63158	6
GTTTTTA	5390	0.0	42.411877	2
TTACGAG	85	0.0	42.35294	3