##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546949_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 705922 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.797069647921443 31.0 31.0 34.0 30.0 34.0 2 32.14390683389949 33.0 31.0 34.0 30.0 34.0 3 32.051134544609745 33.0 31.0 34.0 30.0 34.0 4 35.85038007031938 37.0 35.0 37.0 35.0 37.0 5 35.877912857227855 37.0 35.0 37.0 35.0 37.0 6 35.93326599822643 37.0 35.0 37.0 35.0 37.0 7 36.15062853969702 37.0 35.0 37.0 35.0 37.0 8 13.0343437376934 0.0 0.0 36.0 0.0 37.0 9 24.82839747167534 18.0 17.0 39.0 17.0 39.0 10 32.76730998608912 32.0 32.0 38.0 27.0 39.0 11 35.64981258552645 37.0 35.0 37.0 32.0 39.0 12 36.773453724349146 38.0 35.0 39.0 33.0 39.0 13 37.005680514277785 39.0 37.0 39.0 33.0 39.0 14 38.23995285598126 40.0 37.0 41.0 34.0 41.0 15 38.50915681902533 40.0 38.0 41.0 34.0 41.0 16 38.606983491093914 40.0 38.0 41.0 34.0 41.0 17 38.58702802859239 40.0 38.0 41.0 34.0 41.0 18 38.49534651137095 40.0 38.0 41.0 34.0 41.0 19 38.43635274152102 40.0 37.0 41.0 34.0 41.0 20 38.36343817022277 40.0 37.0 41.0 34.0 41.0 21 38.28613642867059 40.0 37.0 41.0 34.0 41.0 22 38.23837336136287 40.0 37.0 41.0 34.0 41.0 23 38.063793166950454 40.0 36.0 41.0 34.0 41.0 24 37.77679970308334 40.0 35.0 41.0 34.0 41.0 25 37.66564861273625 40.0 35.0 41.0 33.0 41.0 26 37.5835163091673 39.0 35.0 41.0 33.0 41.0 27 37.52568839050207 39.0 35.0 41.0 33.0 41.0 28 37.42792688144016 39.0 35.0 41.0 33.0 41.0 29 37.37457112825496 39.0 35.0 41.0 33.0 41.0 30 37.238935746442245 39.0 35.0 41.0 33.0 41.0 31 37.07933879380442 39.0 35.0 41.0 33.0 41.0 32 36.772309121970984 39.0 35.0 41.0 31.0 41.0 33 36.44467660733056 39.0 35.0 41.0 31.0 41.0 34 36.10759120696054 39.0 35.0 41.0 29.0 41.0 35 35.854493839262695 39.0 35.0 41.0 27.0 41.0 36 35.69436424987463 39.0 35.0 41.0 25.0 41.0 37 35.614052260731356 39.0 35.0 41.0 25.0 41.0 38 35.50534761630888 39.0 35.0 41.0 24.0 41.0 39 35.44191426248226 39.0 35.0 41.0 24.0 41.0 40 35.32399330237618 39.0 35.0 41.0 23.0 41.0 41 35.24956298287913 39.0 35.0 41.0 23.0 41.0 42 35.189673929980934 39.0 35.0 41.0 23.0 41.0 43 35.07657361578191 38.0 35.0 40.0 23.0 41.0 44 34.86407421783143 38.0 35.0 40.0 22.0 41.0 45 34.78125911927947 38.0 34.0 40.0 23.0 41.0 46 34.74262028949374 38.0 34.0 40.0 22.0 41.0 47 34.70303942928539 38.0 34.0 40.0 22.0 41.0 48 34.61860233850199 38.0 34.0 40.0 22.0 41.0 49 34.52835157425324 38.0 34.0 40.0 21.0 41.0 50 34.421199509294226 38.0 34.0 40.0 20.0 41.0 51 34.08073129892538 37.0 34.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 2.0 15 8.0 16 31.0 17 77.0 18 218.0 19 498.0 20 880.0 21 1628.0 22 2674.0 23 4213.0 24 7083.0 25 10911.0 26 14081.0 27 14494.0 28 13584.0 29 13010.0 30 14152.0 31 17352.0 32 21953.0 33 30581.0 34 47068.0 35 77997.0 36 72334.0 37 118777.0 38 158219.0 39 64076.0 40 19.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.252036343958682 22.21194409580662 25.696040072415933 20.83997948781877 2 38.27009216315684 23.443666580727047 26.19127892316715 12.094962332948967 3 28.122653777612822 23.046880533543366 36.53123149583099 12.299234193012826 4 24.69989602250674 25.279280147098405 35.41694408164075 14.603879748754112 5 21.81614965959412 29.46062029516009 35.101611792804306 13.62161825244149 6 20.082672023254695 37.41702341051844 32.820198265530756 9.68010630069611 7 79.62182790733254 4.344247664756163 14.215734882890743 1.8181895450205547 8 29.566864327786924 64.38501704154284 5.128895260382875 0.9192233702873689 9 76.24085947172634 5.526814577247912 15.13708313383065 3.0952428171951007 10 42.036230631712854 26.860333011295868 20.863636492417008 10.239799864574273 11 35.76910763512116 22.51495207685835 28.049274565745225 13.666665722275265 12 32.534189329699316 21.83853173580084 31.3941200302583 14.233158904241543 13 21.186618351602586 31.85040273571301 31.22922929162145 15.73374962106295 14 15.79749604063905 34.59716512589209 34.04342122784104 15.561917605627817 15 15.362887117840215 24.97060581763991 44.62773507554659 15.038771988973288 16 17.288737282589295 22.051586435895185 44.49372593572661 16.16595034578891 17 17.589195406857982 21.86728845396517 34.2017956658101 26.34172047336675 18 20.99707899739631 25.62336915409918 35.551944832431914 17.827607016072598 19 24.618867240290005 26.85693320225181 30.476171588362455 18.048027969095738 20 26.507886140395115 24.80288190479968 30.59020685004859 18.099025104756617 21 21.797875685982305 26.831717951841703 32.90051875419664 18.469887607979352 22 20.86391980983735 24.69465465023048 32.76806786018852 21.673357679743653 23 19.1195344528149 28.769750765665332 32.10722997724961 20.003484804270162 24 19.188380585957088 25.37886622034729 38.19331314224518 17.239440051450444 25 18.68875031519063 26.203886548372203 35.83384566566845 19.273517470768724 26 16.972413382781667 31.262802405931534 31.93681454891617 19.82796966237063 27 18.02635418643986 29.558789781307283 34.792087511084794 17.622768521168062 28 15.833902329152513 28.251846521287057 39.37403849150473 16.540212658055705 29 16.437651751893267 27.17878179175603 38.331005408529556 18.052561047821147 30 18.540858621774078 27.452608078512924 36.550922056544486 17.45561124316851 31 25.349117891211776 26.32514640427696 30.86927450908174 17.456461195429522 32 24.41686191958885 27.873334447715187 31.583659384464575 16.12614424823139 33 22.772912588076302 27.977311940979316 30.669252410322954 18.580523060621427 34 18.31689620099671 29.06298429571539 32.922475854272854 19.69764364901505 35 18.909454585634105 27.741166871127405 33.11201520847912 20.237363334759365 36 23.92998093273761 28.636733236816532 29.851315017806503 17.58197081263936 37 19.974869744815997 30.767563555180317 30.942370403529 18.31519629647468 38 19.067687364893004 32.727270151659816 28.184558633956726 20.020483849490454 39 20.119361629188496 29.94056000521304 29.391774162017896 20.548304203580567 40 21.1874683038636 28.057632429645203 29.635002167378268 21.119897099112933 41 17.308002867172295 27.57485954538887 31.219454840619786 23.897682746819054 42 20.578760826266926 29.487535450092217 27.586192242202394 22.34751148143846 43 21.269488697051518 29.386391131031473 27.963146069962402 21.380974101954607 44 19.487705440544424 31.78198157870133 29.64930969710535 19.0810032836489 45 19.074345324270954 33.546340813857626 26.73241519601316 20.646898665858266 46 20.84904564526959 31.80620521814025 28.529497593218515 18.815251543371648 47 21.322185737234424 29.817033609945575 29.26739781448942 19.59338283833058 48 20.861369953054304 28.173650913273708 31.29042585441451 19.67455327925748 49 20.50453166213831 27.781397944815435 30.97041882814249 20.74365156490377 50 18.006946943146694 31.19013148761478 30.481554619348877 20.321366949889647 51 18.460821450528528 31.709735636515084 28.711529035785823 21.117913877170565 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 718.0 1 1140.5 2 1563.0 3 14593.5 4 27624.0 5 17743.5 6 7863.0 7 7797.0 8 7731.0 9 8207.5 10 8684.0 11 8948.5 12 9213.0 13 8960.0 14 8707.0 15 8211.5 16 7716.0 17 7207.0 18 6698.0 19 6310.0 20 5922.0 21 5761.0 22 5600.0 23 5926.5 24 6253.0 25 6775.5 26 8483.0 27 9668.0 28 10910.0 29 12152.0 30 13368.0 31 14584.0 32 16061.5 33 17539.0 34 18893.0 35 20247.0 36 22088.0 37 23929.0 38 29375.5 39 34822.0 40 40858.0 41 46894.0 42 49764.0 43 52634.0 44 52517.0 45 52400.0 46 51789.0 47 51178.0 48 49608.0 49 48038.0 50 45455.0 51 42872.0 52 39668.0 53 36464.0 54 33989.0 55 31514.0 56 29223.5 57 26933.0 58 24898.0 59 22863.0 60 20048.5 61 17234.0 62 14837.5 63 12441.0 64 9924.5 65 7408.0 66 5992.0 67 4576.0 68 3785.5 69 2995.0 70 2567.5 71 2140.0 72 1758.5 73 1377.0 74 1074.5 75 557.5 76 343.0 77 260.0 78 177.0 79 128.0 80 79.0 81 51.5 82 24.0 83 19.0 84 14.0 85 11.0 86 8.0 87 7.5 88 7.0 89 5.5 90 4.0 91 2.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 705922.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.170798843704404 #Duplication Level Percentage of deduplicated Percentage of total 1 71.81172950172365 23.82052433920188 2 7.618427303772026 5.054186391976143 3 3.7330241970141405 3.714821841535116 4 2.46500210775154 3.2706435626213475 5 1.851684308541306 3.071092386033377 6 1.5330734282769454 3.051196218120171 7 1.2964964318935541 3.0104075640745114 8 1.1119896141465577 2.9508467045715157 9 1.007807031086154 3.008678787128679 >10 7.478711231365849 43.148861890475715 >50 0.0653847493757131 1.4345896283702286 >100 0.024089118112025777 1.2730663050413078 >500 0.0017206512937161268 0.377553625099675 >1k 0.0 0.0 >5k 4.301628234290317E-4 1.0028143904763855 >10k+ 4.301628234290317E-4 1.8107163652739515 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12690 1.7976490320460332 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7028 0.9955774150685203 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 916 0.12975937851490674 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.005383030986426262 0.0 2 0.0 0.0 0.0 0.02025719555418304 0.0 3 0.0 0.0 0.0 0.036831264643969165 0.0 4 0.0 0.0 0.0 0.053405333733755285 0.0 5 0.0 0.0 0.0 0.10199427132176075 0.0 6 0.0 0.0 0.0 0.18118149030629446 0.0 7 0.0 0.0 0.0 0.24393629891121116 0.0 8 0.0 0.0 0.0 0.3490470618566924 0.0 9 0.0 0.0 0.0 0.5764092916781174 0.0 10 0.0 0.0 0.0 0.8350780964469162 0.0 11 0.0 0.0 0.0 1.0931802663750385 0.0 12 0.0 0.0 0.0 1.2902275322202736 0.0 13 0.0 0.0 0.0 1.3834389635115494 0.0 14 0.0 0.0 0.0 1.4266448701131287 0.0 15 0.0 0.0 0.0 1.470134094135046 0.0 16 0.0 0.0 0.0 1.5501712653805944 0.0 17 0.0 0.0 0.0 1.6398412289176425 0.0 18 0.0 0.0 0.0 1.7659174809681524 0.0 19 0.0 0.0 0.0 1.83008887667476 0.0 20 0.0 0.0 0.0 1.8948269072220443 0.0 21 1.4165871016911217E-4 0.0 0.0 1.9728808565252252 0.0 22 1.4165871016911217E-4 0.0 0.0 2.0580177413368617 0.0 23 1.4165871016911217E-4 0.0 0.0 2.147971022294248 0.0 24 1.4165871016911217E-4 0.0 0.0 2.2171004728567745 0.0 25 1.4165871016911217E-4 0.0 0.0 2.2750388853159413 0.0 26 1.4165871016911217E-4 0.0 0.0 2.331560710673417 0.0 27 1.4165871016911217E-4 0.0 0.0 2.3999818676850984 0.0 28 1.4165871016911217E-4 0.0 0.0 2.470102929218809 0.0 29 1.4165871016911217E-4 0.0 0.0 2.5386657449406593 0.0 30 1.4165871016911217E-4 0.0 0.0 2.636976889798023 0.0 31 1.4165871016911217E-4 0.0 0.0 2.714180886840189 0.0 32 1.4165871016911217E-4 0.0 0.0 2.7983261606806416 0.0 33 1.4165871016911217E-4 0.0 0.0 2.8748218641719623 0.0 34 1.4165871016911217E-4 0.0 0.0 2.9558506463886944 0.0 35 1.4165871016911217E-4 0.0 0.0 3.052461886724029 0.0 36 1.4165871016911217E-4 0.0 0.0 3.1387320412170183 0.0 37 1.4165871016911217E-4 0.0 0.0 3.226418782811699 0.0 38 1.4165871016911217E-4 0.0 0.0 3.3282713954232905 0.0 39 1.4165871016911217E-4 0.0 0.0 3.4366403087026614 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCTATA 25 3.88927E-5 45.000004 20 ACGTGCG 35 1.2110286E-7 45.000004 1 GTATCGG 25 3.88927E-5 45.000004 1 GCGGAGT 35 1.2110286E-7 45.000004 4 TCTGCGA 40 6.8084773E-9 45.0 2 ATTACGC 20 7.0314354E-4 45.0 22 CACGACG 105 0.0 45.0 26 ATCGTAG 20 7.0314354E-4 45.0 1 TAGCACG 20 7.0314354E-4 45.0 1 TCTACGA 20 7.0314354E-4 45.0 2 ATCGGTT 20 7.0314354E-4 45.0 39 GACGAAC 20 7.0314354E-4 45.0 33 TAAGCGA 40 6.8084773E-9 45.0 2 GCGTAAG 20 7.0314354E-4 45.0 1 CGTGCGG 30 2.1643064E-6 44.999996 2 CGTTTTT 7770 0.0 44.247105 1 CGACGGT 120 0.0 43.124996 28 CGAGGTT 95 0.0 42.63158 6 GTTTTTA 5390 0.0 42.411877 2 TTACGAG 85 0.0 42.35294 3 >>END_MODULE