##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546948_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1371988 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.762852882095178 31.0 31.0 34.0 30.0 34.0 2 32.11218392580693 33.0 31.0 34.0 30.0 34.0 3 32.14343857234903 33.0 31.0 34.0 30.0 34.0 4 35.88099895917457 37.0 35.0 37.0 35.0 37.0 5 35.854023504578755 37.0 35.0 37.0 35.0 37.0 6 35.90471345230425 37.0 35.0 37.0 35.0 37.0 7 36.10886757027029 37.0 35.0 37.0 35.0 37.0 8 13.240531987160237 0.0 0.0 35.0 0.0 37.0 9 24.919653087344788 18.0 17.0 39.0 17.0 39.0 10 32.724203856010405 32.0 32.0 38.0 27.0 39.0 11 35.62322119435447 37.0 35.0 37.0 32.0 39.0 12 36.57014274177325 37.0 35.0 39.0 33.0 39.0 13 36.69629253317085 39.0 35.0 39.0 33.0 39.0 14 37.883881637448724 40.0 36.0 41.0 33.0 41.0 15 38.214728554477155 40.0 37.0 41.0 33.0 41.0 16 38.332625358239284 40.0 37.0 41.0 34.0 41.0 17 38.32299262092671 40.0 37.0 41.0 34.0 41.0 18 38.28307244669779 40.0 37.0 41.0 34.0 41.0 19 38.25397962664397 40.0 37.0 41.0 34.0 41.0 20 38.229721396980146 40.0 37.0 41.0 34.0 41.0 21 38.15651157298752 40.0 36.0 41.0 34.0 41.0 22 38.08957877182599 40.0 36.0 41.0 33.0 41.0 23 38.01744403012271 40.0 36.0 41.0 34.0 41.0 24 37.95068032665009 40.0 36.0 41.0 34.0 41.0 25 37.85248486138363 40.0 35.0 41.0 33.0 41.0 26 37.766086146526064 40.0 35.0 41.0 33.0 41.0 27 37.704432546057255 40.0 35.0 41.0 33.0 41.0 28 37.66049775945562 40.0 35.0 41.0 33.0 41.0 29 37.70661259427925 40.0 36.0 41.0 33.0 41.0 30 37.62906891313918 40.0 36.0 41.0 33.0 41.0 31 37.5704007615227 40.0 35.0 41.0 33.0 41.0 32 37.41753499301743 40.0 35.0 41.0 33.0 41.0 33 37.28864027965259 40.0 35.0 41.0 33.0 41.0 34 37.17501975235935 40.0 35.0 41.0 32.0 41.0 35 37.084674209978516 40.0 35.0 41.0 32.0 41.0 36 36.97709892506349 40.0 35.0 41.0 32.0 41.0 37 36.90624772228328 40.0 35.0 41.0 31.0 41.0 38 36.83832147219947 40.0 35.0 41.0 31.0 41.0 39 36.79478610600093 40.0 35.0 41.0 31.0 41.0 40 36.65806406470028 39.0 35.0 41.0 31.0 41.0 41 36.634230765866754 39.0 35.0 41.0 31.0 41.0 42 36.6036065913113 39.0 35.0 41.0 31.0 41.0 43 36.5009919911836 39.0 35.0 41.0 31.0 41.0 44 36.26226905774686 39.0 35.0 41.0 30.0 41.0 45 36.18473193643093 39.0 35.0 40.0 30.0 41.0 46 36.16740306766531 39.0 35.0 40.0 30.0 41.0 47 36.13681096336119 39.0 35.0 40.0 30.0 41.0 48 36.09710726332884 38.0 35.0 40.0 30.0 41.0 49 36.00367058604011 38.0 35.0 40.0 30.0 41.0 50 35.89293055041298 38.0 35.0 40.0 29.0 41.0 51 35.50563270232684 38.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 4.0 13 7.0 14 9.0 15 32.0 16 49.0 17 127.0 18 292.0 19 645.0 20 1172.0 21 2088.0 22 3241.0 23 5042.0 24 7504.0 25 10961.0 26 14104.0 27 16178.0 28 17314.0 29 20109.0 30 25297.0 31 33404.0 32 44390.0 33 63096.0 34 99194.0 35 156393.0 36 142104.0 37 242661.0 38 338292.0 39 128225.0 40 53.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.7182336871751 24.20750035714598 27.810665982501305 13.263599973177609 2 32.40494814823453 26.183465161502873 29.09879678247915 12.31278990778345 3 30.12424306918136 25.52201622754718 30.87782108881419 13.475919614457268 4 28.290917996367316 27.412630431169955 29.305212582034244 14.991238990428487 5 23.923897293562334 32.401158027621236 28.193759712184068 15.48118496663236 6 22.378694274293945 41.3655950343589 25.592570780502456 10.663139910844702 7 86.6416470114899 5.030218923197579 6.522797575488999 1.8053364898235262 8 32.704877885229315 63.95850401023916 2.3006032122729936 1.0360148922585328 9 82.89934022746554 6.159018883547087 7.587675693956506 3.3539651950308604 10 51.24017119683263 25.078207681116744 12.755213602451335 10.926407519599298 11 45.4023650352627 21.26862625620632 19.163651577127496 14.16535713140348 12 41.0631871415785 21.285244477356947 23.51755263165567 14.134015749408887 13 22.640285483546503 37.17743886972772 22.84655550923186 17.335720137493915 14 16.168946084076538 39.870028017737766 26.969550754088228 16.99147514409747 15 16.09686090548897 24.99125356781546 43.32705533867643 15.584830188019136 16 17.595634947244438 20.210818170421316 42.79410607089858 19.39944081143567 17 18.13616445624889 20.758053277433913 27.625533167928584 33.48024909838861 18 22.17876541194238 24.967856861721824 31.399545768621884 21.453831957713916 19 28.6272183138628 26.60890620034578 24.431846342679382 20.332029143112038 20 31.778703603821608 23.48985559640463 24.487094639311714 20.244346160462044 21 24.13067752779179 28.477800097376942 25.784700740822807 21.606821634008462 22 23.282856701370566 24.88848298964714 25.65335848418499 26.1753018247973 23 22.662443111747333 28.72386638950195 24.20298136718397 24.410709131566747 24 22.10675312028968 24.498610775021355 34.610288136630935 18.78434796805803 25 19.60286824666105 25.452627865549843 32.547587879777375 22.396916008011733 26 17.883392566115738 33.517931643717006 26.37588666956271 22.222789120604553 27 19.098199109613205 32.437309947317324 28.19929911923428 20.265191823835195 28 16.5947515575938 28.870004693918606 36.034498844013214 18.500744904474384 29 17.487179188156166 25.833024778642375 35.18973926885658 21.490056764344878 30 19.776120490849774 29.830217173911144 30.49531045461039 19.89835188062869 31 29.799896209004746 26.39498304649895 23.43759566410202 20.367525080394287 32 29.76607667122453 27.752866643148483 24.208375000364434 18.272681685262555 33 27.848640075569175 28.004107907649338 23.72265646638309 20.4245955503984 34 20.425470193616853 28.747846191074554 27.194188287361115 23.632495327947474 35 21.52569847549687 26.042210281722582 29.817024638699465 22.615066604081086 36 28.272404714910042 27.05898302317513 25.715020831085987 18.953591430828844 37 22.15398385408619 31.422286492301684 27.324145692236375 19.099583961375753 38 20.683708603865337 32.01383685571594 24.23782132205238 23.064633218366343 39 21.91148902176987 29.99494164671994 26.119761980425483 21.973807351084705 40 23.657495546608278 26.607448461648353 26.415537162132612 23.319518829610754 41 18.06961868471153 25.7369597984822 27.648638326282736 28.544783190523532 42 21.873296267897388 26.7566480173296 23.905456899039933 27.464598815733083 43 23.31871707332717 26.13535978448791 24.811077064813976 25.73484607737094 44 20.38407041461004 29.75084330183646 27.205850196940496 22.659236086613003 45 19.636104688962295 34.78215552905711 22.95049227835812 22.631247503622482 46 22.866672303256298 32.65626229967026 24.724341612317307 19.752723784756135 47 22.450123470467673 27.705344361612493 26.669985451767797 23.174546716152037 48 23.282200718956723 24.348901010796013 29.994504325110714 22.374393945136546 49 21.0872835622469 25.60051545640341 29.771980512949092 23.540220468400598 50 19.445869788948592 30.412583783531634 28.357026446295446 21.784519981224328 51 19.152135441417855 32.05990139855451 25.68302346667755 23.104939693350087 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 753.0 1 1507.0 2 2261.0 3 6247.5 4 10234.0 5 7573.5 6 4913.0 7 5073.0 8 5233.0 9 5298.5 10 5364.0 11 5354.5 12 5345.0 13 5012.5 14 4680.0 15 4497.5 16 4315.0 17 4234.0 18 4153.0 19 4180.5 20 4208.0 21 4780.5 22 5353.0 23 5594.0 24 5835.0 25 7586.5 26 12869.5 27 16401.0 28 18856.0 29 21311.0 30 24234.0 31 27157.0 32 30052.5 33 32948.0 34 34105.5 35 35263.0 36 38731.5 37 42200.0 38 56636.0 39 71072.0 40 88154.5 41 105237.0 42 114045.0 43 122853.0 44 120014.5 45 117176.0 46 113457.0 47 109738.0 48 105310.0 49 100882.0 50 96389.5 51 91897.0 52 85257.5 53 78618.0 54 74420.5 55 70223.0 56 68460.5 57 66698.0 58 62471.5 59 58245.0 60 52420.5 61 46596.0 62 39112.5 63 31629.0 64 25674.5 65 19720.0 66 16157.0 67 12594.0 68 10334.5 69 8075.0 70 6774.5 71 5474.0 72 4625.5 73 3777.0 74 2962.0 75 1677.0 76 1207.0 77 906.5 78 606.0 79 384.5 80 163.0 81 101.0 82 39.0 83 31.5 84 24.0 85 20.5 86 17.0 87 11.5 88 6.0 89 5.0 90 4.0 91 4.0 92 4.0 93 2.0 94 0.0 95 0.0 96 0.0 97 1.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1371988.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.910397217775927 #Duplication Level Percentage of deduplicated Percentage of total 1 77.0994425118852 16.121799681925992 2 5.553845505727329 2.3226623122183616 3 1.969256526148231 1.2353380855637117 4 1.2182767905756113 1.01898606448533 5 0.8898784032901431 0.9303855444158546 6 0.7527953295721662 0.9444749619024322 7 0.6525002328494787 0.9550827337501719 8 0.5609441871955709 0.9383652617009476 9 0.5143916454606009 0.9680520268877878 >10 9.013061190400794 46.5426415905109 >50 1.6254721825669647 22.50254156853688 >100 0.14626783522344475 4.533444984819748 >500 0.0024612376119316 0.3634931643168315 >1k 0.0014064214925323427 0.6227320189651219 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3338 0.2432965885999003 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2185 0.1592579526934638 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1934 0.14096333204080502 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.016108012606524256 0.0 2 0.0 0.0 0.0 0.04344061318320568 0.0 3 0.0 0.0 0.0 0.06319297253328747 0.0 4 0.0 0.0 0.0 0.10204170881961067 0.0 5 0.0 0.0 0.0 0.1951183246500698 0.0 6 0.0 0.0 0.0 0.2738362143109123 0.0 7 0.0 0.0 0.0 0.3271165637017233 0.0 8 0.0 0.0 0.0 0.4259512473870034 0.0 9 0.0 0.0 0.0 0.525077478811768 0.0 10 0.0 0.0 0.0 0.7591903136179033 0.0 11 0.0 0.0 0.0 0.980839482561072 0.0 12 0.0 0.0 0.0 1.1899520987064027 0.0 13 0.0 0.0 0.0 1.277780855226139 0.0 14 0.0 0.0 0.0 1.309268011090476 0.0 15 0.0 0.0 0.0 1.3632043428951273 0.0 16 0.0 0.0 0.0 1.479750551754097 0.0 17 0.0 0.0 0.0 1.604241436514022 0.0 18 0.0 0.0 0.0 1.789228477217002 0.0 19 0.0 0.0 0.0 1.8824508669172033 0.0 20 0.0 0.0 0.0 1.9734137616363991 0.0 21 0.0 0.0 0.0 2.099653932833232 0.0 22 0.0 0.0 0.0 2.2264043125741626 0.0 23 0.0 0.0 0.0 2.369627139595973 0.0 24 0.0 0.0 0.0 2.4715959614807126 0.0 25 0.0 0.0 0.0 2.56139266524197 0.0 26 0.0 0.0 0.0 2.649877404175547 0.0 27 0.0 0.0 0.0 2.732749849124045 0.0 28 0.0 0.0 0.0 2.8268468820427 0.0 29 0.0 0.0 0.0 2.9221101059192938 0.0 30 0.0 0.0 0.0 3.039458071061846 0.0 31 0.0 0.0 0.0 3.160377496013085 0.0 32 0.0 0.0 0.0 3.2756117400443734 0.0 33 0.0 0.0 0.0 3.3820266649562534 0.0 34 0.0 0.0 0.0 3.5070277582602762 0.0 35 0.0 0.0 0.0 3.658122374248171 0.0 36 0.0 0.0 0.0 3.783852336900906 0.0 37 0.0 0.0 0.0 3.8995239025414214 0.0 38 0.0 0.0 0.0 4.018985588795237 0.0 39 0.0 0.0 0.0 4.149817636888953 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTGGTA 20 7.0337637E-4 45.000004 12 CTATGCG 40 6.8175723E-9 45.000004 1 TAACGCG 45 3.8562575E-10 45.000004 1 TCGATAG 105 0.0 45.000004 1 CATACCG 20 7.0337637E-4 45.000004 1 CTACCGT 20 7.0337637E-4 45.000004 26 TCGTACC 20 7.0337637E-4 45.000004 30 TAATGCG 20 7.0337637E-4 45.000004 1 TACGTAT 20 7.0337637E-4 45.000004 12 TCGTTAG 85 0.0 45.0 1 GTCGAAA 25 3.8912032E-5 45.0 21 AGGCCGT 35 1.2121563E-7 45.0 24 ACGTAAG 25 3.8912032E-5 45.0 1 TATCGCG 35 1.2121563E-7 45.0 1 CGAGGTA 30 2.1658107E-6 44.999996 6 CGTCGGT 30 2.1658107E-6 44.999996 45 ACCCGTA 30 2.1658107E-6 44.999996 20 TTCGCAT 30 2.1658107E-6 44.999996 29 CGTTTTT 3490 0.0 43.065903 1 GAGGGGA 15015 0.0 41.613388 7 >>END_MODULE