##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546947_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1098758 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.7894568230675 31.0 31.0 34.0 30.0 34.0 2 32.142165972852986 33.0 31.0 34.0 30.0 34.0 3 32.07377966758831 33.0 31.0 34.0 30.0 34.0 4 35.87432719488732 37.0 35.0 37.0 35.0 37.0 5 35.89642123197283 37.0 35.0 37.0 35.0 37.0 6 35.94736784624094 37.0 35.0 37.0 35.0 37.0 7 36.160527613905884 37.0 35.0 37.0 35.0 37.0 8 13.306595264835387 0.0 0.0 37.0 0.0 37.0 9 24.97872324934153 18.0 17.0 39.0 17.0 39.0 10 32.77536909856401 32.0 32.0 38.0 27.0 39.0 11 35.65210901763628 37.0 35.0 37.0 32.0 39.0 12 36.78081069716899 38.0 35.0 39.0 33.0 39.0 13 37.08051090412994 39.0 37.0 39.0 33.0 39.0 14 38.28885341449163 40.0 38.0 41.0 34.0 41.0 15 38.53747595011822 40.0 38.0 41.0 34.0 41.0 16 38.589800483819005 40.0 38.0 41.0 34.0 41.0 17 38.54909816356286 40.0 38.0 41.0 34.0 41.0 18 38.4305989125904 40.0 38.0 41.0 34.0 41.0 19 38.390127762437224 40.0 37.0 41.0 34.0 41.0 20 38.336957728635426 40.0 37.0 41.0 34.0 41.0 21 38.29174304077877 40.0 37.0 41.0 34.0 41.0 22 38.250276220969496 40.0 37.0 41.0 34.0 41.0 23 38.08432521082896 40.0 37.0 41.0 34.0 41.0 24 37.83797888160996 40.0 35.0 41.0 34.0 41.0 25 37.732954845379965 40.0 35.0 41.0 33.0 41.0 26 37.6689935363383 40.0 35.0 41.0 33.0 41.0 27 37.61806603455902 40.0 35.0 41.0 33.0 41.0 28 37.501009321433834 40.0 35.0 41.0 33.0 41.0 29 37.45307064885989 40.0 35.0 41.0 33.0 41.0 30 37.290072973302586 40.0 35.0 41.0 33.0 41.0 31 37.14824101394483 40.0 35.0 41.0 33.0 41.0 32 36.89350339201171 40.0 35.0 41.0 31.0 41.0 33 36.57536418392403 40.0 35.0 41.0 31.0 41.0 34 36.220919438129236 40.0 35.0 41.0 29.0 41.0 35 35.94425979151005 40.0 35.0 41.0 27.0 41.0 36 35.8066307594575 39.0 35.0 41.0 26.0 41.0 37 35.75182797303865 39.0 35.0 41.0 25.0 41.0 38 35.64530588173192 39.0 35.0 41.0 25.0 41.0 39 35.54002337184348 39.0 35.0 41.0 24.0 41.0 40 35.44826613321587 39.0 35.0 41.0 24.0 41.0 41 35.36650108577139 39.0 35.0 41.0 23.0 41.0 42 35.29589682168412 39.0 35.0 41.0 23.0 41.0 43 35.19831391443794 39.0 35.0 40.0 23.0 41.0 44 35.00149441460267 38.0 35.0 40.0 23.0 41.0 45 34.94452645623513 38.0 34.0 40.0 23.0 41.0 46 34.91274602778774 38.0 34.0 40.0 23.0 41.0 47 34.87949484781908 38.0 34.0 40.0 23.0 41.0 48 34.80430995724263 38.0 34.0 40.0 23.0 41.0 49 34.70109068602913 38.0 34.0 40.0 23.0 41.0 50 34.60354600376061 38.0 34.0 40.0 22.0 41.0 51 34.26934684434607 37.0 34.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 1.0 12 4.0 13 8.0 14 9.0 15 31.0 16 47.0 17 156.0 18 333.0 19 655.0 20 1296.0 21 2248.0 22 3781.0 23 6273.0 24 10259.0 25 15998.0 26 21224.0 27 22872.0 28 21408.0 29 20830.0 30 22397.0 31 26717.0 32 34530.0 33 47281.0 34 71615.0 35 106627.0 36 115146.0 37 194020.0 38 243378.0 39 109594.0 40 18.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.36954816256173 21.59356291376263 26.132232939373367 19.904655984302273 2 38.10475100067531 22.634738495646904 27.08066744451462 12.179843059163165 3 28.411078690667097 23.234961656706936 35.88306069216333 12.470898960462632 4 25.35735803516334 25.198087294927547 35.18936835954778 14.255186310361335 5 22.459631693239093 29.214076257010184 34.178135676827836 14.148156372922882 6 20.351433163626567 38.48090298318647 31.40109105007654 9.76657280311042 7 80.58962938153806 3.9155118779567477 13.483041761698209 2.0118169788069804 8 30.396957291778538 63.58078849027721 5.017028317427495 1.0052259005167654 9 76.42802145695413 5.145719075538016 15.016773484243117 3.409485983264741 10 40.33253910324203 26.663924176206226 21.53495128135586 11.468585439195893 11 33.33054230321872 22.711188450960083 28.726070708927715 15.232198536893474 12 29.93661934657131 21.055955906578156 33.11393409649804 15.893490650352488 13 23.695117578211033 24.55135707771866 33.76830930923825 17.985216034832057 14 18.373927652858953 27.563303293354863 35.94221839567949 18.120550658106698 15 18.54785130119644 23.59700680222579 41.25275993439866 16.602381962179116 16 23.29448340762934 21.76020561397505 38.24409014541874 16.701220832976873 17 22.6538509844752 21.386966010713916 33.48071185829819 22.4784711465127 18 23.46158116709958 23.21229970566767 35.19619424841503 18.129924878817718 19 25.68208832154123 25.015153473285288 31.409646164123494 17.893112041049985 20 26.857779420036078 24.593768600547165 30.954313870752248 17.594138108664513 21 25.447368756359452 24.007379240924752 33.63798033779959 16.907271664916205 22 23.129023861487244 21.66746453723204 34.74159004985629 20.461921551424425 23 22.21153338587751 24.12214518574609 33.793155544715034 19.873165883661372 24 22.798286792906172 23.091709002346285 35.31942429543175 18.79057990931579 25 22.293899111542306 23.60073828813988 33.81272309280114 20.292639507516668 26 19.996304918826528 26.408180873313324 32.409593377249585 21.185920830610563 27 19.333556615742502 25.252512382162408 35.64788606772374 19.766044934371354 28 18.983616046481572 25.282728316881425 36.290247716057586 19.443407920579418 29 20.767903396380277 25.430895611226497 35.15951647223501 18.641684520158215 30 22.488118402778408 24.01111072683885 35.21931125871211 18.28145961167063 31 25.42361466310143 23.533571541686158 32.25623840736541 18.786575387847005 32 25.89869652826191 24.770240580728423 31.822657946517797 17.508404944491872 33 25.631030672814216 24.304259900724272 30.79495211866489 19.26975730779662 34 21.953423774843962 25.923269728184007 32.655780435728346 19.467526061243696 35 21.25272352965803 27.105422668139845 31.991120883761482 19.65073291844064 36 24.57502015912512 27.610629456167786 29.177580504533303 18.636769880173794 37 22.537173790771035 28.99992537028172 29.18659067783807 19.27631016110918 38 22.93234725025893 29.57457420105246 27.351609726618598 20.14146882207001 39 22.286436139714112 27.850991756146488 28.340453493853968 21.522118610285432 40 22.94672712280593 25.413603359429466 29.690432288092556 21.949237229672047 41 20.272980947578993 26.173552319983106 29.88820104153963 23.66526569089827 42 21.539228838379334 27.328583728173083 28.466777943823846 22.665409489623737 43 21.325897058314933 26.16618036000648 28.79869816647524 23.709224415203348 44 20.693364689949924 27.181690599749896 30.299665622457354 21.82527908784282 45 21.55069633167631 28.11947671825825 28.63624201143473 21.693584938630707 46 22.580859479521422 27.496318570604267 29.768793492288566 20.154028457585746 47 21.371311972245024 27.257685495805262 30.182806405050066 21.188196126899644 48 21.341551096783824 26.05678411442738 31.400818014521853 21.200846774266946 49 21.984094768820796 24.943345122401837 32.08713838716078 20.98542172161659 50 20.56485595554253 26.491183681939063 31.53988412371059 21.404076238807818 51 20.02024103578768 27.60525975692555 30.83035572892302 21.544143478363754 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 810.0 1 1684.0 2 2558.0 3 20121.5 4 37685.0 5 25036.5 6 12388.0 7 11950.0 8 11512.0 9 11424.0 10 11336.0 11 10960.5 12 10585.0 13 10079.5 14 9574.0 15 8806.0 16 8038.0 17 7542.0 18 7046.0 19 6742.5 20 6439.0 21 6774.5 22 7110.0 23 7562.0 24 8014.0 25 8954.5 26 10978.0 27 12061.0 28 14202.0 29 16343.0 30 18859.0 31 21375.0 32 24432.5 33 27490.0 34 29610.5 35 31731.0 36 34534.0 37 37337.0 38 42481.0 39 47625.0 40 53227.0 41 58829.0 42 62681.0 43 66533.0 44 68269.5 45 70006.0 46 71848.5 47 73691.0 48 72918.0 49 72145.0 50 69958.5 51 67772.0 52 64168.5 53 60565.0 54 57656.0 55 54747.0 56 54384.5 57 54022.0 58 52702.0 59 51382.0 60 46682.0 61 41982.0 62 37331.0 63 32680.0 64 27485.5 65 22291.0 66 18143.0 67 13995.0 68 11286.0 69 8577.0 70 7132.0 71 5687.0 72 4571.0 73 3455.0 74 2615.5 75 1335.5 76 895.0 77 650.0 78 405.0 79 304.0 80 203.0 81 140.5 82 78.0 83 60.5 84 43.0 85 33.5 86 24.0 87 20.0 88 16.0 89 10.5 90 5.0 91 2.5 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1098758.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.36535428783262 #Duplication Level Percentage of deduplicated Percentage of total 1 66.94487414148168 22.336394434849005 2 7.862841626258262 5.246929931384497 3 4.7668187741170245 4.771397916729195 4 3.427129471677928 4.573895560512268 5 2.7533791303239328 4.593373508599124 6 2.220120803547074 4.444507030328145 7 1.8504828980542156 4.32194122480079 8 1.5538799274567394 4.147660344027661 9 1.3569171829667108 4.074662029403889 >10 7.202352297391953 36.980867047451724 >50 0.03595555857791402 0.8307728149067025 >100 0.024150440847242615 1.5255032122872496 >500 5.488736496839922E-4 0.10392833945696008 >1k 0.0 0.0 >5k 2.744368248419961E-4 0.7350984221678198 >10k+ 2.744368248419961E-4 1.3130681830949846 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14340 1.3051099514178737 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8028 0.7306431443502572 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 9.101185156331058E-5 0.0 0.0 0.006825888867248293 0.0 2 9.101185156331058E-5 0.0 0.0 0.023208022148644196 0.0 3 9.101185156331058E-5 0.0 0.0 0.039317119875350165 0.0 4 9.101185156331058E-5 0.0 0.0 0.05351496871922662 0.0 5 9.101185156331058E-5 0.0 0.0 0.09838381153993873 0.0 6 9.101185156331058E-5 0.0 0.0 0.1687359727983778 0.0 7 9.101185156331058E-5 0.0 0.0 0.2125126734003302 0.0 8 9.101185156331058E-5 0.0 0.0 0.29069185389321395 0.0 9 9.101185156331058E-5 0.0 0.0 0.433125401589795 0.0 10 9.101185156331058E-5 0.0 0.0 0.6031355403100592 0.0 11 9.101185156331058E-5 0.0 0.0 0.7713254419990572 0.0 12 9.101185156331058E-5 0.0 0.0 0.8771722253671873 0.0 13 9.101185156331058E-5 0.0 0.0 0.930414158531724 0.0 14 9.101185156331058E-5 0.0 0.0 0.9606300932507431 0.0 15 9.101185156331058E-5 0.0 0.0 0.9896628738994392 0.0 16 9.101185156331058E-5 0.0 0.0 1.029435053032606 0.0 17 9.101185156331058E-5 0.0 0.0 1.078126393618977 0.0 18 9.101185156331058E-5 0.0 0.0 1.1457481993305167 0.0 19 9.101185156331058E-5 0.0 0.0 1.1849743073543038 0.0 20 9.101185156331058E-5 0.0 0.0 1.2309352923937755 0.0 21 9.101185156331058E-5 0.0 0.0 1.2846322848161287 0.0 22 9.101185156331058E-5 0.0 0.0 1.3490686757229526 0.0 23 9.101185156331058E-5 0.0 0.0 1.4158713747704226 0.0 24 9.101185156331058E-5 0.0 0.0 1.4711155686693522 0.0 25 9.101185156331058E-5 0.0 0.0 1.5198979211072865 0.0 26 9.101185156331058E-5 0.0 0.0 1.5736859253812032 0.0 27 9.101185156331058E-5 0.0 0.0 1.6347548777801846 0.0 28 9.101185156331058E-5 0.0 0.0 1.698463173874502 0.0 29 1.8202370312662115E-4 0.0 0.0 1.7668130743985482 0.0 30 1.8202370312662115E-4 0.0 0.0 1.8449012430398686 0.0 31 1.8202370312662115E-4 0.0 0.0 1.9142522739311114 0.0 32 1.8202370312662115E-4 0.0 0.0 1.9864246722208165 0.0 33 1.8202370312662115E-4 0.0 0.0 2.063329686791814 0.0 34 1.8202370312662115E-4 0.0 0.0 2.1401436895112482 0.0 35 1.8202370312662115E-4 0.0 0.0 2.228334173676096 0.0 36 1.8202370312662115E-4 0.0 0.0 2.3137032904424815 0.0 37 1.8202370312662115E-4 0.0 0.0 2.4022578220135826 0.0 38 1.8202370312662115E-4 0.0 0.0 2.5208462646005763 0.0 39 1.8202370312662115E-4 0.0 0.0 2.6906743796177137 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATGCG 35 1.2118653E-7 45.000004 1 ATTCGCG 20 7.033149E-4 45.000004 1 CGTTTTT 10500 0.0 44.18572 1 AGCGATA 125 0.0 43.2 8 ACGGTCT 175 0.0 42.428574 30 GTTTTTA 7285 0.0 42.12766 2 TCACGAC 180 0.0 40.0 25 TTAGCGA 130 0.0 39.80769 2 GTTACGA 80 0.0 39.375004 2 TACGCGG 40 3.4580262E-7 39.375004 2 GTATGCG 40 3.4580262E-7 39.375004 1 CGAGGTA 75 0.0 39.0 6 GAGCGAT 715 0.0 38.706295 7 GCGATAA 70 0.0 38.57143 9 CACGACG 190 0.0 37.894737 26 CTCGTCA 30 1.13988935E-4 37.499996 21 TTATTTT 8485 0.0 37.442543 6 ATACGAG 115 0.0 37.173916 3 CGGTCTA 200 0.0 37.125 31 TTTTATT 8615 0.0 37.060356 4 >>END_MODULE