SRR1546946_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546946_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1062997
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10071	0.9474156559237702	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5691	0.5353731007707453	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATACGGT	20	7.0330454E-4	45.000004	11
TCACGAC	135	0.0	45.0	25
CGGTCTA	130	0.0	44.999996	31
CGTTTTT	8175	0.0	43.899086	1
GAGCGAT	760	0.0	41.743423	7
GTTTTTA	5710	0.0	41.61121	2
CACGACG	145	0.0	40.344826	26
AATGCGA	85	0.0	39.705883	2
CGACGGT	150	0.0	39.0	28
GAGGGGA	6340	0.0	38.93139	7
AGCGATG	315	0.0	37.857143	8
AGGGGAA	6455	0.0	37.68009	8
CCGCTCG	90	0.0	37.5	19
CGAGATC	150	0.0	37.5	6
TGATGCG	60	1.546141E-10	37.499996	1
TAGTCGA	30	1.1398643E-4	37.499996	2
GGGCGAT	505	0.0	37.425743	7
TATTTTT	6590	0.0	37.352047	7
TAGAGGC	490	0.0	37.19388	5
ATTAGCG	85	0.0	37.058823	1