SRR1546945_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546945_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1216279
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3706	0.30469982627341263	No Hit
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2891	0.23769217424620503	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1655	0.1360707535031025	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1648	0.13549522765747005	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACTG	30	2.165607E-6	45.000004	37
GTCGATC	30	2.165607E-6	45.000004	18
TTAGTCG	30	2.165607E-6	45.000004	14
TATAGCG	30	2.165607E-6	45.000004	1
ACGTATA	30	2.165607E-6	45.000004	31
CCGAACC	30	2.165607E-6	45.000004	14
CACGTAA	30	2.165607E-6	45.000004	33
CGCGTCA	60	0.0	45.000004	39
GCGCTCA	30	2.165607E-6	45.000004	35
ACGAGCC	30	2.165607E-6	45.000004	5
TGTCGGA	60	0.0	45.000004	2
CGCTTTA	30	2.165607E-6	45.000004	16
AAATGCG	30	2.165607E-6	45.000004	1
CTTCGTC	20	7.033448E-4	45.0	41
ACAACGC	20	7.033448E-4	45.0	27
TATCACG	50	2.1827873E-11	45.0	1
CGGAATA	35	1.2120108E-7	45.0	5
CTATGCG	40	6.8157533E-9	45.0	1
GTACCGC	25	3.8909402E-5	45.0	45
CGAACCG	20	7.033448E-4	45.0	6