SRR1546942_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546942_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	821306
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7653	0.9318086072669627	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4149	0.5051710324775418	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACGATA	20	7.0321077E-4	45.000004	7
CTATGCG	25	3.8898295E-5	45.0	1
CGCATCG	25	3.8898295E-5	45.0	21
GTTAGCG	25	3.8898295E-5	45.0	1
CGAATAT	25	3.8898295E-5	45.0	14
TAGTCGA	25	3.8898295E-5	45.0	2
CGTTTTT	6160	0.0	43.79464	1
TATGCGA	65	0.0	41.53846	2
ATTGCGA	110	0.0	40.909092	2
CGGTCTA	105	0.0	40.714287	31
GTTTTTA	4435	0.0	40.586246	2
CGTAAGA	45	1.9272193E-8	40.000004	2
TATACGA	45	1.9272193E-8	40.000004	2
TGCGTAG	45	1.9272193E-8	40.000004	1
CGACAAT	85	0.0	39.705883	20
TAGAGAC	460	0.0	39.130432	5
CGTAGGA	75	0.0	39.0	2
GAGCGAT	525	0.0	39.0	7
CGACGGT	110	0.0	38.863636	28
GTCGTAC	35	6.246113E-6	38.571426	30