##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546942_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 821306 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.719950907457147 31.0 31.0 34.0 30.0 34.0 2 32.08519358192927 33.0 31.0 34.0 30.0 34.0 3 32.0516250946663 33.0 31.0 34.0 30.0 34.0 4 35.83891387619231 37.0 35.0 37.0 35.0 37.0 5 35.841503653936535 37.0 35.0 37.0 35.0 37.0 6 35.88961726810714 37.0 35.0 37.0 35.0 37.0 7 36.111680664697445 37.0 35.0 37.0 35.0 37.0 8 13.237735996084286 0.0 0.0 36.0 0.0 37.0 9 24.91948433348837 18.0 17.0 39.0 17.0 39.0 10 32.68707521922401 32.0 32.0 38.0 27.0 39.0 11 35.53443418165702 37.0 35.0 37.0 32.0 39.0 12 36.69084360762006 38.0 35.0 39.0 33.0 39.0 13 36.964004889773115 39.0 37.0 39.0 33.0 39.0 14 38.17856925433395 40.0 37.0 41.0 33.0 41.0 15 38.4621493085403 40.0 38.0 41.0 34.0 41.0 16 38.533959328191926 40.0 38.0 41.0 34.0 41.0 17 38.526912015740784 40.0 38.0 41.0 34.0 41.0 18 38.43663871930803 40.0 38.0 41.0 34.0 41.0 19 38.40423788453999 40.0 37.0 41.0 34.0 41.0 20 38.343452988289386 40.0 37.0 41.0 34.0 41.0 21 38.261165753081066 40.0 37.0 41.0 34.0 41.0 22 38.22466291491843 40.0 37.0 41.0 34.0 41.0 23 38.0823079339491 40.0 37.0 41.0 34.0 41.0 24 37.89371074849082 40.0 35.0 41.0 34.0 41.0 25 37.780601870679135 40.0 35.0 41.0 33.0 41.0 26 37.72254068520137 40.0 35.0 41.0 33.0 41.0 27 37.67577370675485 40.0 35.0 41.0 33.0 41.0 28 37.58259162845517 40.0 35.0 41.0 33.0 41.0 29 37.564653125631615 40.0 35.0 41.0 33.0 41.0 30 37.44312107789301 40.0 35.0 41.0 33.0 41.0 31 37.33180203237283 40.0 35.0 41.0 33.0 41.0 32 37.11758224096744 40.0 35.0 41.0 32.0 41.0 33 36.85215741757639 40.0 35.0 41.0 31.0 41.0 34 36.571980479869865 40.0 35.0 41.0 30.0 41.0 35 36.360976298724225 40.0 35.0 41.0 30.0 41.0 36 36.21976827150903 40.0 35.0 41.0 29.0 41.0 37 36.158401375370445 40.0 35.0 41.0 29.0 41.0 38 36.06553951876645 40.0 35.0 41.0 28.0 41.0 39 35.97156723559794 39.0 35.0 41.0 27.0 41.0 40 35.86182859981542 39.0 35.0 41.0 27.0 41.0 41 35.79443106467017 39.0 35.0 41.0 26.0 41.0 42 35.73058518992921 39.0 35.0 41.0 26.0 41.0 43 35.64792172466778 39.0 35.0 41.0 26.0 41.0 44 35.489306056451554 39.0 35.0 40.0 25.0 41.0 45 35.41169064879594 39.0 35.0 40.0 24.0 41.0 46 35.37232773168588 39.0 35.0 40.0 24.0 41.0 47 35.348191782356395 39.0 35.0 40.0 24.0 41.0 48 35.28694664351654 38.0 35.0 40.0 24.0 41.0 49 35.20202579793646 38.0 35.0 40.0 24.0 41.0 50 35.097102663319156 38.0 34.0 40.0 24.0 41.0 51 34.735963209814614 38.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 3.0 14 8.0 15 19.0 16 20.0 17 101.0 18 255.0 19 506.0 20 974.0 21 1712.0 22 2789.0 23 4473.0 24 6801.0 25 10641.0 26 13784.0 27 14832.0 28 14078.0 29 14275.0 30 16211.0 31 19713.0 32 25454.0 33 35243.0 34 52666.0 35 79765.0 36 84906.0 37 145687.0 38 191615.0 39 84752.0 40 21.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.24827287271735 22.838016524900585 26.96656301061967 17.947147591762388 2 35.31619152910121 23.913376987383508 28.170986209768344 12.599445273746934 3 28.088800033117984 24.4597019868356 34.914879472449975 12.536618507596438 4 25.34049428592997 26.72450950072202 33.7998261305774 14.135170082770612 5 22.486381446135788 30.24512179382593 33.14416307685564 14.124333683182638 6 21.130857439249194 38.7966239136205 30.1945925148483 9.877926132282 7 83.22744506919467 4.040150686832923 10.975324665837094 1.7570795781353115 8 31.384039566251797 63.504223760693336 4.208054001797137 0.9036826712577285 9 79.60893990790278 5.585372565158418 11.888991435591606 2.9166960913471955 10 41.5333627174281 30.291389567347615 17.787280258515096 10.387967456709193 11 32.7555137792735 22.79722782982226 28.698804099811763 15.748454291092479 12 30.924527520802236 21.59231760147862 31.240487711035836 16.242667166683304 13 22.65136258593021 28.404151436857884 31.225876835186885 17.71860914202502 14 17.481304166778276 31.77853321417352 32.75746189605336 17.982700722994842 15 16.447341185867387 25.79111804857142 40.95245864513348 16.80908212042771 16 20.53741236518423 22.436339196353124 39.392017104465324 17.634231333997317 17 20.30558646838085 22.430494846013545 31.50932782665657 25.75459085894904 18 21.782137230216264 24.837880156725994 34.74454101151094 18.635441601546805 19 24.829478903112847 25.765670773134495 30.153316790575012 19.251533533177646 20 26.661804491870267 24.89206215466586 29.848314757228124 18.59781859623575 21 24.162857692504378 25.148117753918758 32.21296325608238 18.47606129749448 22 22.459351325815227 22.78468682805191 32.46780128234787 22.288160563784995 23 20.332129559506445 26.011742273890608 31.96360430826026 21.69252385834269 24 20.278556348060285 24.555281466347502 36.53900008035982 18.627162105232397 25 19.971606197933536 25.930530155630176 33.901858746922585 20.1960048995137 26 19.554830964342155 29.859272914114836 30.56546524681422 20.02043087472879 27 18.975022707736215 28.423510847357747 33.44246845877176 19.15899798613428 28 17.5772489181864 27.031946680043735 36.746718032012424 18.644086369757435 29 18.91913610761397 24.92457135342978 35.906470913398906 20.24982162555734 30 19.96186561403423 26.345113757844214 34.11395996132988 19.57906066679167 31 24.85663078073215 25.47759300431264 30.291633081945097 19.374143133010108 32 25.036101039076787 26.10293849064782 30.334248136504545 18.52671233377085 33 23.81706696407916 26.577426683842564 29.580935729192287 20.02457062288599 34 20.830603940553218 27.0457052548015 31.073680211760298 21.05001059288499 35 20.5057554675115 27.018553377182197 31.29832242793794 21.17736872736836 36 24.702120768629477 26.831168894419378 29.243180982483995 19.223529354467153 37 21.82341295448956 29.26570608275113 29.56279389167984 19.348087071079476 38 20.779587632380622 30.019992548453317 27.576688834612188 21.62373098455387 39 21.015309762743726 28.335115048471582 28.83346767221961 21.81610751656508 40 22.343681892011016 26.681772688863838 29.31501778874135 21.659527630383803 41 19.455964037764247 26.399661027680306 30.315984541693354 23.8283903928621 42 21.59304814527107 26.988601081691844 28.305893296773675 23.112457476263415 43 21.73952217565682 27.057515712779402 28.49376480873146 22.70919730283232 44 20.509529943772478 28.62672377895693 29.464048722400666 21.399697554869928 45 20.437327865618904 30.83783632409845 27.32526001271146 21.399575797571185 46 21.90961712199838 29.112900672830833 29.048612819095442 19.92886938607535 47 21.355499655426843 27.864523088836563 29.62659471622026 21.15338253951633 48 21.434763656907414 26.186342240285594 31.134802375728416 21.24409172707858 49 20.99083654569673 26.001758175393825 31.532948742612376 21.47445653629707 50 20.071447182901377 28.50314012073454 30.62476105130122 20.800651645062864 51 19.597933048096568 29.30125921398358 29.60224325647201 21.49856448144784 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 589.0 1 1047.0 2 1505.0 3 10554.5 4 19604.0 5 13426.5 6 7249.0 7 7183.0 8 7117.0 9 7121.0 10 7125.0 11 6879.5 12 6634.0 13 6352.5 14 6071.0 15 5700.0 16 5329.0 17 4931.0 18 4533.0 19 4504.5 20 4476.0 21 4884.5 22 5293.0 23 5804.5 24 6316.0 25 6931.0 26 9193.0 27 10840.0 28 12004.0 29 13168.0 30 15275.5 31 17383.0 32 20113.0 33 22843.0 34 24878.0 35 26913.0 36 28857.0 37 30801.0 38 36176.5 39 41552.0 40 47722.0 41 53892.0 42 57606.5 43 61321.0 44 62646.0 45 63971.0 46 63176.0 47 62381.0 48 60315.5 49 58250.0 50 54893.5 51 51537.0 52 47908.5 53 44280.0 54 41495.5 55 38711.0 56 36635.0 57 34559.0 58 31861.5 59 29164.0 60 26231.5 61 23299.0 62 20196.0 63 17093.0 64 14248.0 65 11403.0 66 9378.0 67 7353.0 68 6080.0 69 4807.0 70 3866.0 71 2925.0 72 2312.5 73 1700.0 74 1283.5 75 673.0 76 479.0 77 360.0 78 241.0 79 172.0 80 103.0 81 81.0 82 59.0 83 36.5 84 14.0 85 8.5 86 3.0 87 2.0 88 1.0 89 1.5 90 2.0 91 1.5 92 1.0 93 1.0 94 1.0 95 1.0 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 821306.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.322742338284925 #Duplication Level Percentage of deduplicated Percentage of total 1 68.04017671759085 21.992451006940623 2 7.251538062503739 4.687791927011485 3 4.278185707725028 4.148480829183876 4 3.0757794210873604 3.9767050286882375 5 2.4589705107189364 3.9740335117704544 6 2.0747223034117668 4.0236428662002925 7 1.8195847111830132 4.11697774475758 8 1.5216387049998437 3.93468286349372 9 1.3128356103766052 3.819100245005523 >10 8.113717421118434 42.153973943919496 >50 0.03624057486375803 0.7889830904074308 >100 0.015477737073810264 0.8691500364699796 >500 3.7750578228786023E-4 0.07394425412054535 >1k 3.7750578228786023E-4 0.5062618982609615 >5k 3.7750578228786023E-4 0.9338207537698574 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7653 0.9318086072669627 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4149 0.5051710324775418 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0074271952232176554 0.0 2 0.0 0.0 0.0 0.02276861486461806 0.0 3 0.0 0.0 0.0 0.037744762609794646 0.0 4 0.0 0.0 0.0 0.057104173109657055 0.0 5 0.0 0.0 0.0 0.1183480943765174 0.0 6 0.0 0.0 0.0 0.20272590240421962 0.0 7 0.0 0.0 0.0 0.25629911385037973 0.0 8 0.0 0.0 0.0 0.3399463780856343 0.0 9 0.0 0.0 0.0 0.4811848446255111 0.0 10 0.0 0.0 0.0 0.6565153548129442 0.0 11 0.0 0.0 0.0 0.9307127915782911 0.0 12 0.0 0.0 0.0 1.0769433073665602 0.0 13 0.0 0.0 0.0 1.1602252997055909 0.0 14 0.0 0.0 0.0 1.1949261298468536 0.0 15 0.0 0.0 0.0 1.2352277957302151 0.0 16 0.0 0.0 0.0 1.311934893937217 0.0 17 0.0 0.0 0.0 1.3950951289775066 0.0 18 0.0 0.0 0.0 1.5124691649640938 0.0 19 0.0 0.0 0.0 1.5755394457120733 0.0 20 0.0 0.0 0.0 1.6492026114505434 0.0 21 0.0 0.0 0.0 1.73784192493419 0.0 22 0.0 0.0 0.0 1.830012200081334 0.0 23 0.0 0.0 0.0 1.9382544386623257 0.0 24 0.0 0.0 0.0 2.0132569346869498 0.0 25 0.0 0.0 0.0 2.087772401516609 0.0 26 0.0 0.0 0.0 2.1571740617991346 0.0 27 0.0 0.0 0.0 2.2281585669652966 0.0 28 0.0 0.0 0.0 2.3105882582131385 0.0 29 0.0 0.0 0.0 2.3965489111244773 0.0 30 0.0 0.0 0.0 2.5063739945891057 0.0 31 0.0 0.0 0.0 2.600127114619886 0.0 32 0.0 0.0 0.0 2.691201574078358 0.0 33 0.0 0.0 0.0 2.778623314574592 0.0 34 0.0 0.0 0.0 2.878464299542436 0.0 35 0.0 0.0 0.0 2.9887764122020295 0.0 36 0.0 0.0 0.0 3.087034552286237 0.0 37 0.0 0.0 0.0 3.1894324405276473 0.0 38 0.0 0.0 0.0 3.301692669967101 0.0 39 0.0 0.0 0.0 3.4342863682963474 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GACGATA 20 7.0321077E-4 45.000004 7 CTATGCG 25 3.8898295E-5 45.0 1 CGCATCG 25 3.8898295E-5 45.0 21 GTTAGCG 25 3.8898295E-5 45.0 1 CGAATAT 25 3.8898295E-5 45.0 14 TAGTCGA 25 3.8898295E-5 45.0 2 CGTTTTT 6160 0.0 43.79464 1 TATGCGA 65 0.0 41.53846 2 ATTGCGA 110 0.0 40.909092 2 CGGTCTA 105 0.0 40.714287 31 GTTTTTA 4435 0.0 40.586246 2 CGTAAGA 45 1.9272193E-8 40.000004 2 TATACGA 45 1.9272193E-8 40.000004 2 TGCGTAG 45 1.9272193E-8 40.000004 1 CGACAAT 85 0.0 39.705883 20 TAGAGAC 460 0.0 39.130432 5 CGTAGGA 75 0.0 39.0 2 GAGCGAT 525 0.0 39.0 7 CGACGGT 110 0.0 38.863636 28 GTCGTAC 35 6.246113E-6 38.571426 30 >>END_MODULE