##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546941_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 840513 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.711408389876183 31.0 31.0 34.0 30.0 34.0 2 32.085623898738035 33.0 31.0 34.0 30.0 34.0 3 32.05112116052934 33.0 31.0 34.0 30.0 34.0 4 35.83600967504369 37.0 35.0 37.0 35.0 37.0 5 35.83069506360996 37.0 35.0 37.0 35.0 37.0 6 35.871806860810004 37.0 35.0 37.0 35.0 37.0 7 36.087113465228974 37.0 35.0 37.0 35.0 37.0 8 13.032668144335661 0.0 0.0 35.0 0.0 37.0 9 24.79681337468903 18.0 17.0 38.0 17.0 39.0 10 32.618210545226546 32.0 32.0 37.0 27.0 39.0 11 35.5395324046148 37.0 35.0 37.0 32.0 39.0 12 36.66510095620175 37.0 35.0 39.0 33.0 39.0 13 36.922317679797935 39.0 37.0 39.0 33.0 39.0 14 38.11676202509658 40.0 37.0 41.0 33.0 41.0 15 38.40054466736386 40.0 38.0 41.0 34.0 41.0 16 38.47801878138708 40.0 38.0 41.0 34.0 41.0 17 38.452191697213486 40.0 38.0 41.0 34.0 41.0 18 38.346380127374594 40.0 37.0 41.0 34.0 41.0 19 38.30786317403776 40.0 37.0 41.0 34.0 41.0 20 38.2415774651909 40.0 37.0 41.0 34.0 41.0 21 38.195314052251426 40.0 37.0 41.0 34.0 41.0 22 38.14220125090272 40.0 37.0 41.0 34.0 41.0 23 37.99126485848524 40.0 36.0 41.0 34.0 41.0 24 37.786924176068666 40.0 35.0 41.0 33.0 41.0 25 37.68818566756255 40.0 35.0 41.0 33.0 41.0 26 37.60932906451179 40.0 35.0 41.0 33.0 41.0 27 37.56052434644081 40.0 35.0 41.0 33.0 41.0 28 37.46862570834716 40.0 35.0 41.0 33.0 41.0 29 37.44781460845936 40.0 35.0 41.0 33.0 41.0 30 37.313932086713706 40.0 35.0 41.0 33.0 41.0 31 37.204828479749864 40.0 35.0 41.0 32.0 41.0 32 36.97407654610934 40.0 35.0 41.0 31.0 41.0 33 36.72413990027519 40.0 35.0 41.0 31.0 41.0 34 36.438846276024286 40.0 35.0 41.0 30.0 41.0 35 36.21157317019487 40.0 35.0 41.0 29.0 41.0 36 36.06741240171181 39.0 35.0 41.0 28.0 41.0 37 35.99271278374041 39.0 35.0 41.0 28.0 41.0 38 35.88602317870158 39.0 35.0 41.0 27.0 41.0 39 35.7868087703581 39.0 35.0 41.0 27.0 41.0 40 35.67927444310796 39.0 35.0 41.0 26.0 41.0 41 35.60624285406651 39.0 35.0 41.0 26.0 41.0 42 35.54601772964844 39.0 35.0 41.0 25.0 41.0 43 35.45011439442341 39.0 35.0 41.0 25.0 41.0 44 35.272932125975444 39.0 35.0 40.0 24.0 41.0 45 35.18168903990777 38.0 35.0 40.0 24.0 41.0 46 35.16093980699882 38.0 35.0 40.0 24.0 41.0 47 35.112779933207456 38.0 35.0 40.0 24.0 41.0 48 35.033531902540474 38.0 34.0 40.0 23.0 41.0 49 34.94192475309722 38.0 34.0 40.0 24.0 41.0 50 34.83383719228614 38.0 34.0 40.0 24.0 41.0 51 34.48058626100965 37.0 34.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 1.0 12 1.0 13 5.0 14 7.0 15 26.0 16 55.0 17 146.0 18 296.0 19 589.0 20 1165.0 21 1868.0 22 3122.0 23 4651.0 24 7387.0 25 11159.0 26 14561.0 27 15424.0 28 15033.0 29 15345.0 30 17491.0 31 21130.0 32 27530.0 33 37370.0 34 55938.0 35 83896.0 36 89681.0 37 149301.0 38 187496.0 39 79816.0 40 21.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.609774030859725 22.96740205089035 27.516885521104374 19.905938397145555 2 35.85714914581928 24.466724488496904 26.953063188790654 12.72306317689316 3 28.1309152862597 24.280885602007345 34.227430152775746 13.360768958957209 4 26.13606214300076 25.763313595387576 33.584370497541386 14.516253764070274 5 23.061630218687874 29.529227983386335 32.55380939973564 14.855332398190152 6 21.229653794765817 38.14943968742899 30.29173849779837 10.32916802000683 7 81.5449612320095 4.337470092669596 11.98839280296676 2.129175872354146 8 30.137309000574646 64.4255353575733 4.32747619608501 1.1096794457670494 9 77.68160635231102 5.52626788639795 12.967556718337491 3.8245690429535295 10 42.1590147921567 26.23124211047301 19.050746389407422 12.558996707962875 11 34.67691754916343 22.888759602766406 27.2250399458426 15.209282902227569 12 31.385832223891835 21.06487347607949 31.395588170557744 16.15370612947093 13 23.213442266806105 27.55840778191414 31.871844932796993 17.35630501848276 14 17.88562461258779 30.905411338075677 33.50549009949876 17.70347394983778 15 17.388428257504643 23.684821055712405 41.6575353385373 17.269215348245652 16 20.947564166169947 22.28282013484622 39.0343754350022 17.735240263981638 17 21.8423748353684 21.628695808393207 31.028788370911574 25.50014098532682 18 22.61214282230019 23.86911326773054 33.903342363532744 19.615401546436523 19 26.318807680547472 25.241727373639673 29.42809926794708 19.01136567786578 20 26.925104073345686 24.718713452379678 29.43381006599541 18.922372408279227 21 25.00425335479642 24.670766543765534 31.87886445539807 18.446115646039978 22 23.101486830066875 22.315419273705466 32.35809559162083 22.22499830460683 23 21.673311418145826 25.304665127130693 31.59594200208682 21.426081452636662 24 21.615965487743793 24.12812175421439 35.03455627694039 19.221356481101424 25 21.148274922577045 24.48373790768257 33.78293970468035 20.58504746506003 26 19.512131281729133 27.97172679066237 31.0769732294444 21.439168698164096 27 19.44050835620627 27.17566533771637 33.391869013328765 19.991957292748594 28 18.244215140039476 25.843145793104927 36.88568766931624 19.02695139753936 29 19.267161840447443 25.0529141131666 35.73769828664161 19.942225759744346 30 20.784092572036364 25.544518645160753 34.24468152188009 19.426707260922793 31 25.800671732620433 24.288143074527106 30.101378562853874 19.809806629998583 32 25.948081707243077 25.713820012302012 29.740646486134064 18.59745179432085 33 24.961779294311924 24.853155156434227 29.685918004837518 20.499147544416328 34 21.07272582339595 26.18055877779404 31.229975027156037 21.516740371653977 35 21.079269446159667 26.183890076655565 31.40974619071924 21.327094286465528 36 25.72595545815472 26.007688161872572 29.357547117058274 18.908809262914435 37 21.767896510821366 28.59051555419131 29.412037648436133 20.22955028655119 38 22.099241772584126 29.376702085512065 27.146397497718656 21.377658644185157 39 21.439287673123438 27.889872018636236 28.53697682248817 22.133863485752155 40 22.818564376755624 26.159619184950145 28.958624078390223 22.06319235990401 41 19.97530079844095 25.459570524191772 30.03725105976945 24.527877617597824 42 22.010724402834935 26.780787447665887 28.335314266406346 22.873173883092825 43 22.227615753712314 26.437187765091082 27.96744369212612 23.367752789070483 44 21.259635484519574 27.563880630043798 29.772174850359246 21.404309035077386 45 20.842033377235094 29.258084051049778 27.94079330123389 21.95908927048124 46 22.980727246336464 28.012059301878732 28.87665033140475 20.130563120380053 47 21.740175345295075 27.09000336699135 29.642016244840946 21.52780504287263 48 22.084488877625926 26.037669851626326 30.7835809797112 21.094260291036544 49 21.8730703748782 24.77332295871688 31.149785904560666 22.203820761844252 50 20.266670473865368 28.052034888217076 30.210240650650256 21.4710539872673 51 19.95971507876737 28.705683314832726 29.14315424032704 22.191447366072865 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 771.0 1 1353.0 2 1935.0 3 11586.5 4 21238.0 5 14252.0 6 7266.0 7 7230.0 8 7194.0 9 7275.5 10 7357.0 11 7080.0 12 6803.0 13 6646.5 14 6490.0 15 6034.5 16 5579.0 17 5280.5 18 4982.0 19 4745.5 20 4509.0 21 4751.0 22 4993.0 23 5203.5 24 5414.0 25 6556.5 26 8628.0 27 9557.0 28 11079.5 29 12602.0 30 14173.0 31 15744.0 32 17389.0 33 19034.0 34 21143.5 35 23253.0 36 25649.0 37 28045.0 38 33516.5 39 38988.0 40 45683.0 41 52378.0 42 55503.5 43 58629.0 44 59408.0 45 60187.0 46 61468.5 47 62750.0 48 61053.5 49 59357.0 50 57026.5 51 54696.0 52 51025.0 53 47354.0 54 44924.5 55 42495.0 56 40711.5 57 38928.0 58 36445.0 59 33962.0 60 30733.0 61 27504.0 62 24245.0 63 20986.0 64 17832.5 65 14679.0 66 12731.0 67 10783.0 68 8842.0 69 6901.0 70 5578.5 71 4256.0 72 3396.0 73 2536.0 74 1969.0 75 1087.0 76 772.0 77 543.5 78 315.0 79 207.0 80 99.0 81 67.5 82 36.0 83 29.5 84 23.0 85 20.0 86 17.0 87 12.0 88 7.0 89 5.5 90 4.0 91 3.0 92 2.0 93 2.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 840513.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.987273839448072 #Duplication Level Percentage of deduplicated Percentage of total 1 69.86369032906829 22.347489939903074 2 6.861482613809762 4.389602466250895 3 3.7652135511492943 3.6131675077383956 4 2.765455679005439 3.538375523808152 5 2.1686691263247773 3.4684906605453625 6 1.8665508622326286 3.58235241392958 7 1.6141130383752387 3.614175303643262 8 1.4094783724223359 3.6068296535562268 9 1.229102482489637 3.53840739157273 >10 8.386096511810786 44.50952285781721 >50 0.05037183343201229 1.0643847660106298 >100 0.0182831017756949 1.0308463670458334 >500 7.46249052068903E-4 0.1786704887654597 >1k 3.731245260344515E-4 0.5286116197342826 >5k 3.731245260344515E-4 0.9890730396789345 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8287 0.9859454880531294 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4429 0.5269400949182226 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 977 0.11623853527548057 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.379499186806153E-4 0.0 0.0 0.0035692487802092294 0.0 2 2.379499186806153E-4 0.0 0.0 0.016299569429622147 0.0 3 2.379499186806153E-4 0.0 0.0 0.032599138859244293 0.0 4 2.379499186806153E-4 0.0 0.0 0.060439279344876286 0.0 5 2.379499186806153E-4 0.0 0.0 0.1334899043798252 0.0 6 2.379499186806153E-4 0.0 0.0 0.21831905038946453 0.0 7 2.379499186806153E-4 0.0 0.0 0.274951131035451 0.0 8 2.379499186806153E-4 0.0 0.0 0.3608510516791531 0.0 9 2.379499186806153E-4 0.0 0.0 0.5088559010984958 0.0 10 2.379499186806153E-4 0.0 0.0 0.7659607882329006 0.0 11 2.379499186806153E-4 0.0 0.0 0.9608417716323245 0.0 12 2.379499186806153E-4 0.0 0.0 1.13692471145598 0.0 13 2.379499186806153E-4 0.0 0.0 1.2118789358403737 0.0 14 2.379499186806153E-4 0.0 0.0 1.249475022991911 0.0 15 2.379499186806153E-4 0.0 0.0 1.2883798346961914 0.0 16 2.379499186806153E-4 0.0 0.0 1.3605976350157583 0.0 17 2.379499186806153E-4 0.0 0.0 1.4330533852540055 0.0 18 2.379499186806153E-4 0.0 0.0 1.549172945570146 0.0 19 2.379499186806153E-4 0.0 0.0 1.6175835471908226 0.0 20 2.379499186806153E-4 0.0 0.0 1.690396222307091 0.0 21 2.379499186806153E-4 0.0 0.0 1.7772479426255157 0.0 22 2.379499186806153E-4 0.0 0.0 1.8598165644076892 0.0 23 2.379499186806153E-4 0.0 0.0 1.954877556920595 0.0 24 2.379499186806153E-4 0.0 0.0 2.034828729597282 0.0 25 2.379499186806153E-4 0.0 0.0 2.097647508128964 0.0 26 2.379499186806153E-4 0.0 0.0 2.168318633977107 0.0 27 2.379499186806153E-4 0.0 0.0 2.248388781613134 0.0 28 2.379499186806153E-4 0.0 0.0 2.3283399542898207 0.0 29 2.379499186806153E-4 0.0 0.0 2.4111465259906746 0.0 30 2.379499186806153E-4 0.0 0.0 2.511799341592575 0.0 31 2.379499186806153E-4 0.0 0.0 2.605789559471418 0.0 32 2.379499186806153E-4 0.0 0.0 2.6957346287326907 0.0 33 2.379499186806153E-4 0.0 0.0 2.7863935477500053 0.0 34 2.379499186806153E-4 0.0 0.0 2.8893068875793713 0.0 35 2.379499186806153E-4 0.0 0.0 2.999120775050475 0.0 36 2.379499186806153E-4 0.0 0.0 3.103461814391925 0.0 37 2.379499186806153E-4 0.0 0.0 3.2122049272289663 0.0 38 2.379499186806153E-4 0.0 0.0 3.3418876329099017 0.0 39 2.379499186806153E-4 0.0 0.0 3.528559344114844 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTAACG 20 7.032203E-4 45.0 1 CTATACG 20 7.032203E-4 45.0 1 ATTAACG 25 3.889908E-5 45.0 1 TAACGCC 50 2.1827873E-11 45.0 12 TCTAACG 20 7.032203E-4 45.0 1 ATAACGC 50 2.1827873E-11 45.0 11 GTAACGA 25 3.889908E-5 45.0 2 CGTTTTT 6535 0.0 43.6228 1 CGGTCTA 130 0.0 41.538464 31 GTTTTTA 4825 0.0 41.40933 2 GTCGATG 50 1.0804797E-9 40.5 1 TTAACGA 50 1.0804797E-9 40.5 2 TGTACGA 45 1.9272193E-8 40.000004 2 CACGACG 130 0.0 39.807693 26 GAGCGAT 570 0.0 39.473686 7 CGAGACT 80 0.0 39.375 6 TATACGA 40 3.4567347E-7 39.375 2 AGGGGAA 4760 0.0 38.665966 8 ATATGCG 35 6.246286E-6 38.571426 1 GTTACGA 35 6.246286E-6 38.571426 2 >>END_MODULE