SRR1546940_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546940_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1316255
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3435	0.2609676696384819	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2138	0.16243053207775088	No Hit
AAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2122	0.1612149621463926	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1867	0.14184181636536994	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTAGA	150	0.0	45.000004	2
ACTACAT	25	3.891115E-5	45.000004	16
AACGAGT	25	3.891115E-5	45.000004	4
TACTCGC	25	3.891115E-5	45.000004	45
CGTAAGA	75	0.0	45.000004	2
GTAAGCG	90	0.0	45.000004	1
CGATCGA	25	3.891115E-5	45.000004	6
ATCGATC	25	3.891115E-5	45.000004	24
GTACGTA	25	3.891115E-5	45.000004	22
ACGGTTT	25	3.891115E-5	45.000004	11
AACGTGT	20	7.03366E-4	45.0	22
AGCGTAA	20	7.03366E-4	45.0	19
ACTATCG	20	7.03366E-4	45.0	13
CGAACGC	20	7.03366E-4	45.0	24
CAACGTA	20	7.03366E-4	45.0	35
CGACGAA	20	7.03366E-4	45.0	10
ACGTTAG	110	0.0	45.0	1
CGCGATC	20	7.03366E-4	45.0	30
TAAGTCG	20	7.03366E-4	45.0	38
TGCGGTA	20	7.03366E-4	45.0	33