SRR1546939_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546939_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	840770
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2658	0.3161387775491514	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1582	0.1881608525518275	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1504	0.17888364237544158	No Hit
AAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	843	0.10026523306017104	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	35	1.2114106E-7	45.000004	1
AACGTCC	30	2.164803E-6	45.000004	33
ACTATCG	30	2.164803E-6	45.000004	1
CGAGTTA	35	1.2114106E-7	45.000004	6
CGACGGT	60	0.0	45.000004	28
CGGCCTA	30	2.164803E-6	45.000004	45
TCGATAG	60	0.0	45.000004	1
CGTTCAC	35	1.2114106E-7	45.000004	22
TACTCGC	35	1.2114106E-7	45.000004	45
TTACACG	70	0.0	45.000004	34
TGGTATG	70	0.0	45.000004	1
CTCACGT	55	1.8189894E-12	45.0	45
GGTACGT	20	7.032206E-4	45.0	31
ACAGTCG	25	3.8899096E-5	45.0	35
TCCGCAT	25	3.8899096E-5	45.0	32
CGAGTGT	25	3.8899096E-5	45.0	6
CTATACG	40	6.8121153E-9	45.0	1
ATTAACG	40	6.8121153E-9	45.0	1
TAAGTCG	20	7.032206E-4	45.0	32
CGCGAGT	20	7.032206E-4	45.0	4