SRR1546938_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546938_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	587359
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2828	0.48147725666926017	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1505	0.2562317083759677	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	655	0.111516125572265	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAGCG	25	3.8884675E-5	45.000004	1
GCAACGA	40	6.8048394E-9	45.000004	2
TACGTCG	20	7.0304656E-4	45.000004	1
GAGCGAT	525	0.0	42.857143	7
TCACGAC	90	0.0	42.5	25
ACGGTCT	90	0.0	42.5	30
CGTTTTT	2455	0.0	41.88391	1
CGCGTAA	65	0.0	41.53846	31
GAGGGGA	5055	0.0	40.50445	7
CGCATCG	50	1.0804797E-9	40.500004	21
ATTACGA	50	1.0804797E-9	40.500004	2
AGGGGAA	5115	0.0	40.16129	8
TTTACGG	45	1.9255822E-8	40.0	2
GGCACGA	45	1.9255822E-8	40.0	2
GCGATAT	45	1.9255822E-8	40.0	9
GCGAGTT	45	1.9255822E-8	40.0	5
TGCAACG	40	3.45437E-7	39.375004	1
GACGAGG	190	0.0	39.078945	4
CCGCTCG	70	0.0	38.571426	19
CGAGGTA	35	6.2430736E-6	38.571426	6