##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546938_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 587359 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.843267916214785 31.0 31.0 34.0 30.0 34.0 2 32.2019514470707 33.0 31.0 34.0 30.0 34.0 3 32.21335333245936 33.0 31.0 34.0 30.0 34.0 4 35.93838180737845 37.0 35.0 37.0 35.0 37.0 5 35.93567988232069 37.0 35.0 37.0 35.0 37.0 6 35.98411193154442 37.0 35.0 37.0 35.0 37.0 7 36.17933495528288 37.0 35.0 37.0 35.0 37.0 8 13.18514571156652 0.0 0.0 37.0 0.0 37.0 9 24.93069485612717 18.0 17.0 39.0 17.0 39.0 10 32.80849531547146 32.0 32.0 38.0 27.0 39.0 11 35.688558445516286 37.0 35.0 37.0 32.0 39.0 12 36.73440604468477 38.0 35.0 39.0 33.0 39.0 13 36.934501727223044 39.0 37.0 39.0 33.0 39.0 14 38.13229728326288 40.0 37.0 41.0 33.0 41.0 15 38.43694401549989 40.0 38.0 41.0 34.0 41.0 16 38.537667763667535 40.0 38.0 41.0 34.0 41.0 17 38.52764323011991 40.0 38.0 41.0 34.0 41.0 18 38.46164951928888 40.0 37.0 41.0 34.0 41.0 19 38.44032354999242 40.0 37.0 41.0 34.0 41.0 20 38.41300124795909 40.0 37.0 41.0 34.0 41.0 21 38.33848293803279 40.0 37.0 41.0 34.0 41.0 22 38.28767244564227 40.0 37.0 41.0 34.0 41.0 23 38.18040925566817 40.0 37.0 41.0 34.0 41.0 24 38.07350019323787 40.0 36.0 41.0 34.0 41.0 25 37.976173004925435 40.0 36.0 41.0 34.0 41.0 26 37.92172759760215 40.0 36.0 41.0 34.0 41.0 27 37.86655180221977 40.0 36.0 41.0 33.0 41.0 28 37.79946676564077 40.0 36.0 41.0 33.0 41.0 29 37.8149121746666 40.0 36.0 41.0 33.0 41.0 30 37.71707422547369 40.0 36.0 41.0 33.0 41.0 31 37.63118637834783 40.0 36.0 41.0 33.0 41.0 32 37.47785936709917 40.0 35.0 41.0 33.0 41.0 33 37.326820564595074 40.0 35.0 41.0 33.0 41.0 34 37.15178281085333 40.0 35.0 41.0 32.0 41.0 35 37.012200374898484 40.0 35.0 41.0 32.0 41.0 36 36.88780115738415 40.0 35.0 41.0 31.0 41.0 37 36.812320914466284 40.0 35.0 41.0 31.0 41.0 38 36.72687572677017 40.0 35.0 41.0 31.0 41.0 39 36.654143377389296 40.0 35.0 41.0 31.0 41.0 40 36.53780056149646 39.0 35.0 41.0 30.0 41.0 41 36.50110409476998 39.0 35.0 41.0 31.0 41.0 42 36.44835100849736 39.0 35.0 41.0 30.0 41.0 43 36.35048241365162 39.0 35.0 41.0 30.0 41.0 44 36.15112903692631 39.0 35.0 41.0 30.0 41.0 45 36.06862242682925 39.0 35.0 40.0 30.0 41.0 46 36.0405544139104 39.0 35.0 40.0 30.0 41.0 47 36.012280394103094 39.0 35.0 40.0 30.0 41.0 48 35.9474120597454 39.0 35.0 40.0 29.0 41.0 49 35.85813276037313 38.0 35.0 40.0 29.0 41.0 50 35.74318091661148 38.0 35.0 40.0 29.0 41.0 51 35.36980279522405 38.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 0.0 14 4.0 15 8.0 16 24.0 17 65.0 18 146.0 19 276.0 20 516.0 21 865.0 22 1442.0 23 2248.0 24 3573.0 25 5233.0 26 7002.0 27 7407.0 28 7649.0 29 8256.0 30 9961.0 31 13104.0 32 17752.0 33 25137.0 34 39728.0 35 62888.0 36 62242.0 37 107727.0 38 144950.0 39 59136.0 40 18.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.31189442913108 22.89655900394818 28.341440243530787 14.450106323389955 2 33.12812096179679 24.254331677900566 29.78723404255319 12.83031331774945 3 29.902155240662015 24.181292871991406 32.409480402956284 13.507071484390295 4 27.270715184410214 26.401229912200204 31.25277726228763 15.07527764110195 5 23.264987852403728 32.2038140217482 30.116334303211495 14.414863822636582 6 21.933434236982833 39.99223643461664 27.763429180450117 10.3109001479504 7 85.61339827941686 4.549347162467929 7.993067272315568 1.8441872857996557 8 32.11255807776845 63.99935984636313 2.8571963654255748 1.0308857104428466 9 81.64359446267105 5.7096256292999685 9.326834184885223 3.319945723143767 10 47.13658937719521 25.482711595463766 15.575823303975934 11.804875723365097 11 40.279284049448464 22.38460634807673 22.55826504744117 14.777844555033633 12 35.65008793599826 22.525916858343876 26.72777636845609 15.09621883720178 13 23.58846974337671 32.118516954707424 27.36299265015093 16.930020651764934 14 17.53084570084054 35.2009588684263 30.01435238074159 17.25384304999157 15 16.531286657734025 24.94913672898517 42.35569728224136 16.16387933103945 16 20.51573228638703 21.120983929760165 40.504189090488104 17.859094693364703 17 21.497755205930275 20.752895588558275 28.978018554240254 28.7713306512712 18 24.07965145677516 24.169204864486627 32.689888126341806 19.061255552396407 19 27.422411165913864 25.482371088210105 26.91539586522042 20.179821880655613 20 29.42595584642442 25.116155536903324 26.604342489005873 18.853546127666384 21 25.198217785034366 25.025240100177232 30.397593294731163 19.37894882005724 22 24.30251345429286 23.440689595290102 28.9276234806992 23.32917346971784 23 21.42335437100649 26.87164068312565 28.385706186506038 23.31929875936182 24 21.73474825447469 24.443823964560004 34.58430023205569 19.237127548909612 25 21.000444361966018 25.20656021274893 32.7026571483539 21.090338276931146 26 19.263176353814277 30.928784610434164 28.265847633219206 21.542191402532353 27 19.695790819583934 29.322952402193547 31.872840971194787 19.10841580702773 28 18.06646361084107 27.555719755720098 36.29126309463208 18.08655353880676 29 19.221293961614617 25.962997076745225 34.53799124555851 20.277717716081646 30 20.582301454476735 26.872662204886623 33.19009328196214 19.354943058674507 31 27.29846652558316 25.40984304318143 27.872221247993135 19.419469183242278 32 27.2150422484375 26.66001542497859 28.441549376105584 17.68339295047833 33 25.97099899720614 26.726584593068292 27.694816968838477 19.60759944088709 34 21.362573826228935 27.64748646058033 29.508188348182284 21.481751365008453 35 21.195214511057124 26.413828680585468 30.558312718456687 21.832644089900725 36 27.368100258955767 25.86373921230457 27.82199642807891 18.946164100660752 37 22.302884607199346 30.03512332321459 28.41873539011065 19.243256679475415 38 22.455772364090787 30.649568662436433 25.30275351190669 21.591905461566093 39 21.848647930822544 29.146399391173027 28.041793860313707 20.963158817690715 40 22.623982947396737 26.07808852848088 28.120110528654536 23.177817995467848 41 19.728139008681232 25.145268907090895 29.083916310127194 26.042675774100676 42 22.236996453616953 26.863128001784258 27.40164022344086 23.498235321157928 43 23.103927921424546 26.052039723576208 27.486596783227974 23.35743557177127 44 20.724803740131676 29.847333572823437 28.42179995539355 21.00606273165134 45 20.62282181766177 32.34325174212024 25.420569021671586 21.613357418546407 46 22.88719505447265 29.371304432212668 27.677451098902033 20.06404941441265 47 22.397205116461993 27.965179728241164 27.898099799270977 21.73951535602587 48 23.342112745356758 26.34794052700308 29.402120338668514 20.90782638897165 49 22.1688950028858 25.404394927122937 30.369331192677734 22.057378877313532 50 20.2291954324357 30.162132528828195 28.419927165498443 21.18874487323766 51 20.605796454978982 30.677490257236208 26.874534994781722 21.842178293003087 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 512.0 1 844.5 2 1177.0 3 4323.0 4 7469.0 5 5286.0 6 3103.0 7 3134.0 8 3165.0 9 3199.0 10 3233.0 11 3177.5 12 3122.0 13 3067.5 14 3013.0 15 2810.0 16 2607.0 17 2518.0 18 2429.0 19 2486.0 20 2543.0 21 2675.5 22 2808.0 23 3143.5 24 3479.0 25 4394.0 26 6174.5 27 7040.0 28 7952.5 29 8865.0 30 10530.5 31 12196.0 32 13322.5 33 14449.0 34 15893.5 35 17338.0 36 19693.5 37 22049.0 38 26608.5 39 31168.0 40 36587.0 41 42006.0 42 45278.5 43 48551.0 44 48305.0 45 48059.0 46 46985.5 47 45912.0 48 44043.5 49 42175.0 50 39605.0 51 37035.0 52 34719.5 53 32404.0 54 30171.5 55 27939.0 56 26602.0 57 25265.0 58 23816.5 59 22368.0 60 20225.5 61 18083.0 62 16107.0 63 14131.0 64 11866.5 65 9602.0 66 8020.0 67 6438.0 68 5259.5 69 4081.0 70 3407.5 71 2734.0 72 2205.5 73 1677.0 74 1333.5 75 732.5 76 475.0 77 339.0 78 203.0 79 136.0 80 69.0 81 62.0 82 55.0 83 36.0 84 17.0 85 12.0 86 7.0 87 6.0 88 5.0 89 4.0 90 3.0 91 2.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 587359.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.221305478436058 #Duplication Level Percentage of deduplicated Percentage of total 1 67.11579518990986 18.94095358482596 2 6.348813545792514 3.583436130028867 3 3.6486387800474365 3.0890804877656093 4 2.878473369626071 3.2493710510304217 5 2.313263415758129 3.2641656754100303 6 1.9787878064653726 3.350638509795821 7 1.8211557991633802 3.5976775892410577 8 1.577459965279441 3.5614383648123393 9 1.410771671940774 3.5832436482748107 >10 10.834174247881684 51.26169206230339 >50 0.05510520783592917 0.9901633402815324 >100 0.01574434509597965 0.6757172674271932 >500 6.055517344607558E-4 0.11193596615195031 >1k 0.0012111034689215117 0.7404863226509933 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2828 0.48147725666926017 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1505 0.2562317083759677 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 655 0.111516125572265 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.008512681341394275 0.0 2 0.0 0.0 0.0 0.024005761382731857 0.0 3 0.0 0.0 0.0 0.0328589499777819 0.0 4 0.0 0.0 0.0 0.05056532716788199 0.0 5 0.0 0.0 0.0 0.08785087144318891 0.0 6 0.0 0.0 0.0 0.12666869835994682 0.0 7 0.0 0.0 0.0 0.14829090896708827 0.0 8 0.0 0.0 0.0 0.19170558380819908 0.0 9 0.0 0.0 0.0 0.24788928066140128 0.0 10 0.0 0.0 0.0 0.38187888497494715 0.0 11 0.0 0.0 0.0 0.5514514972955211 0.0 12 0.0 0.0 0.0 0.6849303407285834 0.0 13 0.0 0.0 0.0 0.734474146135498 0.0 14 0.0 0.0 0.0 0.7571178785036068 0.0 15 0.0 0.0 0.0 0.7944034227789137 0.0 16 0.0 0.0 0.0 0.8645479170320026 0.0 17 0.0 0.0 0.0 0.941162049104551 0.0 18 0.0 0.0 0.0 1.0399091526647246 0.0 19 0.0 0.0 0.0 1.096092849517927 0.0 20 0.0 0.0 0.0 1.1630025248612859 0.0 21 0.0 0.0 0.0 1.2418299540825968 0.0 22 0.0 0.0 0.0 1.318954847035629 0.0 23 0.0 0.0 0.0 1.4105512982690314 0.0 24 0.0 0.0 0.0 1.4815470606562597 0.0 25 0.0 0.0 0.0 1.5455624243435446 0.0 26 0.0 0.0 0.0 1.613323367821043 0.0 27 0.0 0.0 0.0 1.684659637461927 0.0 28 0.0 0.0 0.0 1.7541231172077043 0.0 29 0.0 0.0 0.0 1.8310777565339085 0.0 30 0.0 0.0 0.0 1.9172260917088186 0.0 31 0.0 0.0 0.0 2.0023529051227613 0.0 32 0.0 0.0 0.0 2.0808398270904167 0.0 33 0.0 0.0 0.0 2.1584754809239324 0.0 34 0.0 0.0 0.0 2.24241051895008 0.0 35 0.0 0.0 0.0 2.339114578988319 0.0 36 0.0 0.0 0.0 2.4203255589852204 0.0 37 0.0 0.0 0.0 2.5063036405333023 0.0 38 0.0 0.0 0.0 2.6103286065251403 0.0 39 0.0 0.0 0.0 2.7412536455557843 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTAGCG 25 3.8884675E-5 45.000004 1 GCAACGA 40 6.8048394E-9 45.000004 2 TACGTCG 20 7.0304656E-4 45.000004 1 GAGCGAT 525 0.0 42.857143 7 TCACGAC 90 0.0 42.5 25 ACGGTCT 90 0.0 42.5 30 CGTTTTT 2455 0.0 41.88391 1 CGCGTAA 65 0.0 41.53846 31 GAGGGGA 5055 0.0 40.50445 7 CGCATCG 50 1.0804797E-9 40.500004 21 ATTACGA 50 1.0804797E-9 40.500004 2 AGGGGAA 5115 0.0 40.16129 8 TTTACGG 45 1.9255822E-8 40.0 2 GGCACGA 45 1.9255822E-8 40.0 2 GCGATAT 45 1.9255822E-8 40.0 9 GCGAGTT 45 1.9255822E-8 40.0 5 TGCAACG 40 3.45437E-7 39.375004 1 GACGAGG 190 0.0 39.078945 4 CCGCTCG 70 0.0 38.571426 19 CGAGGTA 35 6.2430736E-6 38.571426 6 >>END_MODULE