SRR1546937_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546937_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1350983
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3546	0.2624755455842153	No Hit
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3247	0.2403435128347285	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1759	0.13020149032223202	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1666	0.12331761391520102	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAAGCGA	125	0.0	45.000004	2
AACGTAC	20	7.0337276E-4	45.0	37
TCGTTAG	40	6.8157533E-9	45.0	1
GGTACGA	25	3.8911712E-5	45.0	2
CGAGTTA	35	1.2121382E-7	45.0	6
ATTAGAC	20	7.0337276E-4	45.0	30
CAAGTCG	20	7.0337276E-4	45.0	1
CGACGTG	20	7.0337276E-4	45.0	36
TTTACGT	35	1.2121382E-7	45.0	13
CTATCGT	35	1.2121382E-7	45.0	13
GCGCGTC	25	3.8911712E-5	45.0	38
CGACACG	20	7.0337276E-4	45.0	29
GCGCATC	20	7.0337276E-4	45.0	13
CCGCTCG	80	0.0	45.0	19
TAGCCGA	50	2.1827873E-11	45.0	2
GTAGCGT	20	7.0337276E-4	45.0	23
ATATCGA	25	3.8911712E-5	45.0	26
TACGCGT	20	7.0337276E-4	45.0	34
TGCGCGT	25	3.8911712E-5	45.0	37
TCTACGA	20	7.0337276E-4	45.0	2