##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546937_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1350983 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.812058330859827 31.0 31.0 34.0 30.0 34.0 2 32.16184215493459 33.0 31.0 34.0 30.0 34.0 3 32.18903198633883 33.0 31.0 34.0 30.0 34.0 4 35.906307481293254 37.0 35.0 37.0 35.0 37.0 5 35.874569850249785 37.0 35.0 37.0 35.0 37.0 6 35.92278437256427 37.0 35.0 37.0 35.0 37.0 7 36.15889467150956 37.0 35.0 37.0 35.0 37.0 8 13.258178674343052 0.0 0.0 37.0 0.0 37.0 9 25.018865522364084 18.0 17.0 39.0 17.0 39.0 10 32.835877283429916 32.0 32.0 38.0 27.0 39.0 11 35.68390497881913 37.0 35.0 37.0 32.0 39.0 12 36.561799075191914 37.0 35.0 39.0 33.0 39.0 13 36.601641175351574 39.0 35.0 39.0 33.0 39.0 14 37.764054766048126 39.0 36.0 41.0 33.0 41.0 15 38.17521019879599 40.0 37.0 41.0 33.0 41.0 16 38.3371470995564 40.0 37.0 41.0 34.0 41.0 17 38.354397501671 40.0 37.0 41.0 34.0 41.0 18 38.310613827116995 40.0 36.0 41.0 34.0 41.0 19 38.26576574242607 40.0 36.0 41.0 34.0 41.0 20 38.23141519915499 40.0 36.0 41.0 34.0 41.0 21 38.14651331659984 40.0 36.0 41.0 34.0 41.0 22 38.085123943084405 40.0 36.0 41.0 34.0 41.0 23 38.01367744819883 40.0 36.0 41.0 34.0 41.0 24 37.93221306263661 40.0 35.0 41.0 34.0 41.0 25 37.841401409196116 40.0 35.0 41.0 33.0 41.0 26 37.76136413263527 40.0 35.0 41.0 33.0 41.0 27 37.67322904877412 40.0 35.0 41.0 33.0 41.0 28 37.70031229112431 40.0 35.0 41.0 33.0 41.0 29 37.750799232854895 40.0 36.0 41.0 33.0 41.0 30 37.680545943213204 40.0 36.0 41.0 33.0 41.0 31 37.57815235276832 40.0 35.0 41.0 33.0 41.0 32 37.41622951584143 40.0 35.0 41.0 33.0 41.0 33 37.3056766813498 40.0 35.0 41.0 33.0 41.0 34 37.19754134582004 40.0 35.0 41.0 33.0 41.0 35 37.10024404452166 40.0 35.0 41.0 32.0 41.0 36 36.98732996640224 40.0 35.0 41.0 32.0 41.0 37 36.86506269879044 40.0 35.0 41.0 31.0 41.0 38 36.829445670300814 40.0 35.0 41.0 31.0 41.0 39 36.80104708941563 40.0 35.0 41.0 31.0 41.0 40 36.646180595906834 39.0 35.0 41.0 31.0 41.0 41 36.654071886914934 39.0 35.0 41.0 31.0 41.0 42 36.616866385439344 39.0 35.0 41.0 31.0 41.0 43 36.51929817029526 39.0 35.0 41.0 31.0 41.0 44 36.33016403611296 39.0 35.0 41.0 30.0 41.0 45 36.23483789211263 39.0 35.0 40.0 30.0 41.0 46 36.236329398667486 39.0 35.0 40.0 30.0 41.0 47 36.236581067267316 39.0 35.0 40.0 30.0 41.0 48 36.20744746603029 39.0 35.0 40.0 30.0 41.0 49 36.16262602860288 39.0 35.0 40.0 30.0 41.0 50 36.02232596561171 39.0 35.0 40.0 30.0 41.0 51 35.601598243649256 38.0 35.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 2.0 14 4.0 15 15.0 16 50.0 17 134.0 18 312.0 19 584.0 20 1154.0 21 1952.0 22 3382.0 23 5227.0 24 7682.0 25 10910.0 26 14073.0 27 15357.0 28 16439.0 29 18975.0 30 23722.0 31 31012.0 32 41938.0 33 59136.0 34 97719.0 35 168094.0 36 129457.0 37 230576.0 38 350554.0 39 122485.0 40 36.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.63081992889622 24.03405520276717 31.234960025403723 13.100164842932887 2 29.191188934279705 25.505872390696254 31.96857399389926 13.33436468112478 3 28.502505212870926 25.140138699006577 33.74157927968005 12.615776808442444 4 26.019868495754572 27.615299378304535 32.02919651838698 14.335635607553906 5 23.660993513611942 32.36857902727125 30.21185314693079 13.758574312186015 6 20.23933683843542 40.51642396684488 28.11123456031645 11.133004634403246 7 87.96816836333248 4.702945929001327 5.835232567693302 1.4936531399728938 8 33.77377805642262 63.61634454319558 1.8381430410301243 0.7717343593516721 9 87.76683348347093 4.282733387466756 5.857586660972048 2.092846468090272 10 55.70010873563916 22.429149737635484 11.76121387167714 10.109527655048213 11 49.5499943374565 20.97642975522268 18.204892289540282 11.268683617780535 12 43.111497331942736 22.142987735596968 21.29449445329808 13.45102047916221 13 20.36805792522926 44.42957461344814 21.42321554009192 13.779151921230689 14 13.767900854414897 45.90590703213882 26.047922142617637 14.27826997082865 15 12.17269203239419 25.313123851299384 49.38330090015937 13.130883216147057 16 14.049251544986133 19.059381206129167 48.88085194262252 18.01051530626218 17 15.17339596427194 18.997352298289467 28.10442470408584 37.72482703335275 18 20.957702650588498 23.72672343027262 34.46401620153621 20.851557717602663 19 28.456760743843557 25.232219798472666 25.474561856070725 20.83645760161305 20 31.21963784888485 24.33598350238308 23.804518635689718 20.639860013042355 21 21.96496921130762 29.010949804697766 28.179629203328243 20.844451780666372 22 21.971482986832548 24.30274844317064 26.03519067227345 27.69057789772336 23 17.883496683525994 31.199356320545856 25.339549054281218 25.577597941646935 24 19.074407301942365 25.446582229384084 39.090499288296 16.388511180377545 25 16.034398656385758 26.193075708576647 37.10194724878107 20.670578386256526 26 15.228615015881028 37.13577446940487 26.839715969779043 20.79589454493506 27 16.338621581470676 36.47988168615001 29.766917866472042 17.414578865907266 28 13.50535128865426 29.494597637424008 41.391416472302026 15.608634601619709 29 14.185596709951199 25.38877247160031 39.776444263177254 20.649186555271235 30 18.395790324526658 31.236884549990634 32.51765566258051 17.8496694629022 31 29.766991886648462 26.901300756560225 24.530656566366858 18.801050790424455 32 30.12317697558 27.88199407394468 25.92356824623256 16.07126070424276 33 27.44172206460037 28.727230468481096 24.901497650229498 18.929549816689033 34 18.71429914366058 29.442561453400966 27.318700531390842 24.52443887154761 35 18.41229682386825 26.21039642985885 31.724899573125644 23.652407173147257 36 30.807419486403603 23.377126137042435 27.998871932511367 17.8165824440426 37 19.99965950718847 31.498101752575717 29.55366573820692 18.948573002028894 38 19.342286320405215 33.431582780834404 24.056409296045917 23.169721602714468 39 19.475892738842752 31.696771906086163 28.34284369233366 20.48449166273743 40 23.161209282426203 26.91884353837169 25.67152954552352 24.24841763367859 41 16.795548130509413 23.80844170503996 29.031379373389598 30.364630791061025 42 22.513828819459608 24.651235433754533 24.96026967030673 27.874666076479127 43 22.27511375050611 26.1756069469416 25.1721894353963 26.377089867155988 44 19.166784482114135 32.32749782935833 28.086437801215858 20.419279887311685 45 17.278973902706397 38.6784289661676 22.318193493182374 21.72440363794363 46 22.55409579543192 32.839125288771214 25.678931563165484 18.92784735263138 47 21.21832769176222 28.32337638593528 26.80707307197796 23.65122285032454 48 23.2337490553175 24.149156577099788 30.938213138137193 21.678881229445523 49 21.182501926375092 23.246036404603167 32.22224113848953 23.349220530532214 50 19.159826585530684 33.153118877143534 27.47466104310713 20.212393494218652 51 17.574758527679474 34.347804524557304 24.84442809420992 23.2330088535533 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1975.0 1 2242.0 2 2509.0 3 5616.5 4 8724.0 5 6637.5 6 4551.0 7 5073.0 8 5595.0 9 6108.0 10 6621.0 11 6712.0 12 6803.0 13 6684.5 14 6566.0 15 6273.0 16 5980.0 17 5628.0 18 5276.0 19 5697.0 20 6118.0 21 6019.5 22 5921.0 23 6509.0 24 7097.0 25 8371.0 26 11310.0 27 12975.0 28 14712.0 29 16449.0 30 20527.0 31 24605.0 32 27425.5 33 30246.0 34 33204.0 35 36162.0 36 40791.5 37 45421.0 38 63447.0 39 81473.0 40 106967.0 41 132461.0 42 140922.5 43 149384.0 44 143939.0 45 138494.0 46 133446.5 47 128399.0 48 119088.5 49 109778.0 50 101531.5 51 93285.0 52 82832.0 53 72379.0 54 63652.0 55 54925.0 56 49098.5 57 43272.0 58 38908.5 59 34545.0 60 29103.0 61 23661.0 62 19672.0 63 15683.0 64 13018.5 65 10354.0 66 8037.0 67 5720.0 68 4554.5 69 3389.0 70 2810.5 71 2232.0 72 1756.0 73 1280.0 74 877.0 75 373.5 76 273.0 77 233.5 78 194.0 79 121.5 80 49.0 81 33.5 82 18.0 83 17.0 84 16.0 85 10.0 86 4.0 87 2.5 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1350983.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.784732093615634 #Duplication Level Percentage of deduplicated Percentage of total 1 79.62189791705619 14.956760211571133 2 5.985867838097698 2.248858473729109 3 1.8505433319141142 1.042858821529004 4 0.9982317761856461 0.7500606593192577 5 0.651835312696156 0.6122275859077732 6 0.5090514846011439 0.5737437456053875 7 0.41188877826012216 0.5416054246388136 8 0.3406095527482955 0.5118607357522379 9 0.3080500890976954 0.5207974555603171 >10 6.275817624959472 31.64654382042537 >50 2.5066539087647848 32.591335356767125 >100 0.5367711877547122 13.09765966781922 >500 0.0011919419417203085 0.14307408119624052 >1k 0.0015892559222937448 0.7626139601790222 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3546 0.2624755455842153 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3247 0.2403435128347285 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1759 0.13020149032223202 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1666 0.12331761391520102 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.010732925580854829 0.0 2 0.0 0.0 0.0 0.039526774208113645 0.0 3 0.0 0.0 0.0 0.05803181831303577 0.0 4 0.0 0.0 0.0 0.09518994687571938 0.0 5 0.0 0.0 0.0 0.16691549782639753 0.0 6 0.0 0.0 0.0 0.2435263804207751 0.0 7 0.0 0.0 0.0 0.28890074856604414 0.0 8 0.0 0.0 0.0 0.4021516184881675 0.0 9 0.0 0.0 0.0 0.5159946498216483 0.0 10 0.0 0.0 0.0 0.7309492421444237 0.0 11 0.0 0.0 0.0 0.9735133602717428 0.0 12 0.0 0.0 0.0 1.1908365982399483 0.0 13 0.0 0.0 0.0 1.2684097431277819 0.0 14 0.0 0.0 0.0 1.2960932891087453 0.0 15 0.0 0.0 0.0 1.336508305433895 0.0 16 0.0 0.0 0.0 1.4302918689576405 0.0 17 0.0 0.0 0.0 1.5398417300587794 0.0 18 0.0 0.0 0.0 1.7154175885262806 0.0 19 0.0 0.0 0.0 1.7938789755311504 0.0 20 0.0 0.0 0.0 1.872562423065279 0.0 21 0.0 0.0 0.0 1.9787813762275321 0.0 22 0.0 0.0 0.0 2.0804110784517644 0.0 23 0.0 0.0 0.0 2.204690954660421 0.0 24 0.0 0.0 0.0 2.2942553681282445 0.0 25 0.0 0.0 0.0 2.3662029796081816 0.0 26 0.0 0.0 0.0 2.4434800437903363 0.0 27 0.0 0.0 0.0 2.5163899175637297 0.0 28 0.0 0.0 0.0 2.595443465979957 0.0 29 0.0 0.0 0.0 2.6791602855106245 0.0 30 0.0 0.0 0.0 2.7838248149680638 0.0 31 0.0 0.0 0.0 2.8924864339521665 0.0 32 0.0 0.0 0.0 2.9816067263614716 0.0 33 0.0 0.0 0.0 3.073243704769046 0.0 34 0.0 0.0 0.0 3.169469934114641 0.0 35 0.0 0.0 0.0 3.300115545495391 0.0 36 0.0 0.0 0.0 3.411737971536281 0.0 37 0.0 0.0 0.0 3.514551996583229 0.0 38 0.0 0.0 0.0 3.619734667275606 0.0 39 0.0 0.0 0.0 3.729284528376745 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAAGCGA 125 0.0 45.000004 2 AACGTAC 20 7.0337276E-4 45.0 37 TCGTTAG 40 6.8157533E-9 45.0 1 GGTACGA 25 3.8911712E-5 45.0 2 CGAGTTA 35 1.2121382E-7 45.0 6 ATTAGAC 20 7.0337276E-4 45.0 30 CAAGTCG 20 7.0337276E-4 45.0 1 CGACGTG 20 7.0337276E-4 45.0 36 TTTACGT 35 1.2121382E-7 45.0 13 CTATCGT 35 1.2121382E-7 45.0 13 GCGCGTC 25 3.8911712E-5 45.0 38 CGACACG 20 7.0337276E-4 45.0 29 GCGCATC 20 7.0337276E-4 45.0 13 CCGCTCG 80 0.0 45.0 19 TAGCCGA 50 2.1827873E-11 45.0 2 GTAGCGT 20 7.0337276E-4 45.0 23 ATATCGA 25 3.8911712E-5 45.0 26 TACGCGT 20 7.0337276E-4 45.0 34 TGCGCGT 25 3.8911712E-5 45.0 37 TCTACGA 20 7.0337276E-4 45.0 2 >>END_MODULE