SRR1546936_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546936_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	855474
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2695	0.3150300301353402	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1468	0.17160077337242277	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1151	0.13454529301884102	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATACGA	45	3.8380676E-10	45.000004	2
CATGACG	25	3.8899667E-5	45.0	1
CACGAAC	20	7.032274E-4	45.0	32
CGCGACA	25	3.8899667E-5	45.0	27
CGTTACC	20	7.032274E-4	45.0	29
CCCAACG	20	7.032274E-4	45.0	15
ATATACG	20	7.032274E-4	45.0	1
TAACACG	35	1.211447E-7	45.0	1
AACGCGA	25	3.8899667E-5	45.0	2
TTGCGTC	55	1.8189894E-12	45.0	16
CGTAAGA	35	1.211447E-7	45.0	2
CCAACGG	20	7.032274E-4	45.0	1
TAATGCG	35	1.211447E-7	45.0	1
TAGTACG	25	3.8899667E-5	45.0	1
TCACGAC	155	0.0	43.548386	25
CGTTTTT	2610	0.0	41.982758	1
CGTTAGA	140	0.0	41.785713	2
CGACGGT	185	0.0	41.351353	28
CGCATCG	60	3.6379788E-12	41.250004	21
CTTGCGT	60	3.6379788E-12	41.250004	15