##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546936_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 855474 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.74746164114865 31.0 31.0 34.0 30.0 34.0 2 32.10599270112242 33.0 31.0 34.0 30.0 34.0 3 32.14889523235072 33.0 31.0 34.0 30.0 34.0 4 35.886060827097026 37.0 35.0 37.0 35.0 37.0 5 35.877135950362025 37.0 35.0 37.0 35.0 37.0 6 35.91722016098677 37.0 35.0 37.0 35.0 37.0 7 36.11239616867374 37.0 35.0 37.0 35.0 37.0 8 13.269476337094991 0.0 0.0 36.0 0.0 37.0 9 24.95035734575218 18.0 17.0 39.0 17.0 39.0 10 32.73263360429423 32.0 32.0 38.0 27.0 39.0 11 35.59450550221281 37.0 35.0 37.0 32.0 39.0 12 36.612968950546716 37.0 35.0 39.0 33.0 39.0 13 36.80045682276726 39.0 35.0 39.0 33.0 39.0 14 37.96929421583824 40.0 37.0 41.0 33.0 41.0 15 38.287497925126885 40.0 37.0 41.0 33.0 41.0 16 38.39352803241244 40.0 37.0 41.0 34.0 41.0 17 38.3692245468594 40.0 37.0 41.0 34.0 41.0 18 38.31486053345864 40.0 37.0 41.0 34.0 41.0 19 38.30543418034914 40.0 37.0 41.0 34.0 41.0 20 38.280605839569645 40.0 37.0 41.0 34.0 41.0 21 38.200762384362356 40.0 37.0 41.0 34.0 41.0 22 38.13928886208114 40.0 37.0 41.0 34.0 41.0 23 38.052602416905714 40.0 36.0 41.0 34.0 41.0 24 37.99510797522777 40.0 36.0 41.0 34.0 41.0 25 37.872323413686445 40.0 36.0 41.0 33.0 41.0 26 37.81249926941088 40.0 36.0 41.0 33.0 41.0 27 37.75231509081515 40.0 35.0 41.0 33.0 41.0 28 37.71297666556786 40.0 36.0 41.0 33.0 41.0 29 37.731908859883525 40.0 36.0 41.0 33.0 41.0 30 37.63652665072229 40.0 36.0 41.0 33.0 41.0 31 37.56028353871655 40.0 36.0 41.0 33.0 41.0 32 37.43243979361149 40.0 35.0 41.0 33.0 41.0 33 37.296204209596084 40.0 35.0 41.0 33.0 41.0 34 37.16315165627476 40.0 35.0 41.0 32.0 41.0 35 37.055376317690545 40.0 35.0 41.0 32.0 41.0 36 36.942075387446025 40.0 35.0 41.0 31.0 41.0 37 36.883624750722994 40.0 35.0 41.0 31.0 41.0 38 36.80724837926109 40.0 35.0 41.0 31.0 41.0 39 36.74258247474499 40.0 35.0 41.0 31.0 41.0 40 36.6247472161632 39.0 35.0 41.0 31.0 41.0 41 36.5869214026376 39.0 35.0 41.0 31.0 41.0 42 36.53698066802732 39.0 35.0 41.0 31.0 41.0 43 36.448849409800886 39.0 35.0 41.0 30.0 41.0 44 36.27606449757678 39.0 35.0 41.0 30.0 41.0 45 36.18382440611871 39.0 35.0 40.0 30.0 41.0 46 36.156579860989346 39.0 35.0 40.0 30.0 41.0 47 36.12958430063333 39.0 35.0 40.0 30.0 41.0 48 36.073273997807064 39.0 35.0 40.0 30.0 41.0 49 35.973904525444375 38.0 35.0 40.0 29.0 41.0 50 35.85724171628828 38.0 35.0 40.0 29.0 41.0 51 35.474896957709994 38.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 3.0 12 1.0 13 4.0 14 5.0 15 15.0 16 36.0 17 83.0 18 226.0 19 372.0 20 800.0 21 1343.0 22 2158.0 23 3275.0 24 4931.0 25 7321.0 26 9377.0 27 10395.0 28 10973.0 29 12598.0 30 15519.0 31 20179.0 32 27237.0 33 37787.0 34 59859.0 35 92886.0 36 89298.0 37 156046.0 38 208373.0 39 84352.0 40 22.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.43743000956195 22.722607583631998 28.780886385793142 13.059076021012912 2 32.73962738785749 24.359244114958493 29.570857793457193 13.330270703726823 3 30.674924077178268 24.144976936762543 31.432281986360778 13.747816999698411 4 27.11128567320573 27.251558784954305 30.151705370356087 15.48545017148388 5 23.65331968008379 31.226548089129537 29.514397865978392 15.605734364808283 6 22.38887447193018 40.24365439510728 27.23297259764762 10.134498535314924 7 86.30291510905066 4.839305461066029 6.91745161162116 1.9403278182621564 8 32.664581273072 63.674758087329366 2.592948470672399 1.0677121689262328 9 82.79632110385587 5.506654790209872 8.26524242700538 3.431781678928875 10 48.22075247172912 25.248575643444454 14.687880636933443 11.84279124789298 11 41.49033167577273 22.483558822360468 21.444953324122064 14.581156177744736 12 37.729960232572815 22.409097178873935 25.027762386700235 14.833180201853008 13 23.50486397014988 33.66344272298164 25.39060216908988 17.44109113777859 14 17.556816454971162 36.09016755623198 29.01537627093284 17.337639717864015 15 17.181001409744773 24.95470347433119 41.65199643706296 16.212298678861075 16 20.365785517736366 20.961127982849273 40.51122535576768 18.16186114364668 17 21.273352550749642 20.585196043363094 28.445633648714047 29.695817757173216 18 24.326396827957367 24.381570918578472 31.174530143522773 20.11750210994139 19 28.142877515856707 25.998452320000375 25.78032763123134 20.078342532911577 20 30.623139920091084 24.818872344454654 24.439550471434547 20.11843726401971 21 25.564423933398327 26.792631921016884 27.89576305065963 19.747181094925153 22 24.422133226725766 23.80703563170827 27.653791932893345 24.11703920867262 23 22.507522145617518 28.496599545982694 26.559310978475093 22.4365673299247 24 22.963409758800385 24.792454241742004 33.36208932124179 18.88204667821582 25 20.56707743309557 25.17563362533519 32.342771375868814 21.91451756570042 26 19.772430255039897 31.726621732513205 27.055760899805254 21.445187112641648 27 19.19263472647912 30.340723388437286 30.315357334062753 20.151284551020836 28 17.889848201114237 27.76986793286529 35.3815545533821 18.958729312638372 29 19.887571100933517 25.960344791308675 34.13476037845686 20.017323729300948 30 21.652674423769746 27.64829790268319 31.30603618578706 19.392991487760003 31 28.569307775572373 25.43245031409488 25.749818229426026 20.248423680906726 32 28.9434863011617 26.742601177826565 26.24603436223661 18.067878158775137 33 27.42152303868966 26.02218185473784 25.81937031400136 20.736924792571134 34 21.1965530220673 27.124728513081635 28.967098941639374 22.71161952321169 35 21.286561602105966 27.03530440434192 29.995885322055376 21.682248671496737 36 27.794649515940872 26.291856912074472 26.50285105099629 19.410642520988365 37 22.222066363209166 30.429563025878053 27.110350519127408 20.238020091785373 38 22.129486109455108 31.509432197822495 24.448083752399256 21.91299794032314 39 21.64893380745645 29.05430205944307 26.803619981437194 22.493144151663287 40 23.669100405155504 26.060055594909958 26.54738776397646 23.723456235958075 41 19.230274678131657 25.76875509951208 28.039659884461717 26.961310337894545 42 23.001049710452918 26.878081624923727 24.834302386746995 25.28656627787636 43 22.401382157727763 27.037291606758355 25.659108283828612 24.902217951685266 44 20.868547729095216 29.548881672616584 27.952924343697177 21.629646254591023 45 21.139274834769964 32.41606407675744 23.928021190591416 22.516639897881173 46 23.08217432674751 30.366790808370563 26.08366823538763 20.46736662949429 47 22.687305517175275 27.44759045862294 26.94529582430325 22.919808199898537 48 22.72845229662152 25.677694471135297 29.85549531604701 21.738357916196165 49 21.630932091448717 25.192933975784186 30.37216794432093 22.80396598844617 50 20.13071116129771 30.275613285733993 27.554314917811645 22.039360635156648 51 19.647937868363037 31.373951750725325 26.378475558579222 22.599634822332415 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 604.0 1 1096.5 2 1589.0 3 4643.0 4 7697.0 5 5560.0 6 3423.0 7 3567.5 8 3712.0 9 3727.0 10 3742.0 11 3740.5 12 3739.0 13 3700.5 14 3662.0 15 3328.5 16 2995.0 17 2965.0 18 2935.0 19 3062.0 20 3189.0 21 3438.0 22 3687.0 23 4238.5 24 4790.0 25 5502.5 26 7207.0 27 8199.0 28 9689.5 29 11180.0 30 13144.5 31 15109.0 32 16734.0 33 18359.0 34 20521.5 35 22684.0 36 26107.5 37 29531.0 38 37404.5 39 45278.0 40 53535.0 41 61792.0 42 66655.5 43 71519.0 44 70556.0 45 69593.0 46 69730.0 47 69867.0 48 68521.5 49 67176.0 50 62937.5 51 58699.0 52 54170.5 53 49642.0 54 46399.5 55 43157.0 56 41790.5 57 40424.0 58 38525.0 59 36626.0 60 32616.5 61 28607.0 62 24626.0 63 20645.0 64 17181.0 65 13717.0 66 11069.5 67 8422.0 68 6936.5 69 5451.0 70 4556.0 71 3661.0 72 2897.5 73 2134.0 74 1629.0 75 827.0 76 530.0 77 376.5 78 223.0 79 147.0 80 71.0 81 56.5 82 42.0 83 28.0 84 14.0 85 11.5 86 9.0 87 5.5 88 2.0 89 1.0 90 0.0 91 1.5 92 3.0 93 3.5 94 4.0 95 2.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 855474.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.29004267519012 #Duplication Level Percentage of deduplicated Percentage of total 1 71.70189366902756 17.41642057112624 2 5.385873288460669 2.6164618403975233 3 2.65648346539829 1.9357829022138415 4 1.8844723545720525 1.8309565565108459 5 1.5050168491390847 1.8278461746234265 6 1.266494731065163 1.8457926639285744 7 1.1694416431245083 1.9884051192347127 8 1.0466432774184626 2.033840789935625 9 0.9943361750986023 2.1737221313967323 >10 12.070503285903483 60.14056889161073 >50 0.28928302841397235 4.321006769267215 >100 0.027619987632007813 1.181709194706617 >500 4.8456118652645276E-4 0.06202796271019792 >1k 0.0014536835595793584 0.6254584323377453 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2695 0.3150300301353402 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1468 0.17160077337242277 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1151 0.13454529301884102 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0070136555874287234 0.0 2 0.0 0.0 0.0 0.023378851958095744 0.0 3 0.0 0.0 0.0 0.0368216918340008 0.0 4 0.0 0.0 0.0 0.05645992747880123 0.0 5 0.0 0.0 0.0 0.10146421749813554 0.0 6 0.0 0.0 0.0 0.14822192141432702 0.0 7 0.0 0.0 0.0 0.1769779093227848 0.0 8 0.0 0.0 0.0 0.24103596368796715 0.0 9 0.0 0.0 0.0 0.3142117703168068 0.0 10 0.0 0.0 0.0 0.44104204218947624 0.0 11 0.0 0.0 0.0 0.5944073110345843 0.0 12 0.0 0.0 0.0 0.7206531116083014 0.0 13 0.0 0.0 0.0 0.7769961448273122 0.0 14 0.0 0.0 0.0 0.799439842707084 0.0 15 0.0 0.0 0.0 0.835326380462761 0.0 16 0.0 0.0 0.0 0.9059305133762101 0.0 17 0.0 0.0 0.0 0.9910295345036787 0.0 18 0.0 0.0 0.0 1.1083913713333193 0.0 19 0.0 0.0 0.0 1.1694101749439492 0.0 20 0.0 0.0 0.0 1.239429836558446 0.0 21 0.0 0.0 0.0 1.3233599150880098 0.0 22 0.0 0.0 0.0 1.414303649205002 0.0 23 0.0 0.0 0.0 1.5077021627775946 0.0 24 0.0 0.0 0.0 1.5898788274103013 0.0 25 0.0 0.0 0.0 1.6501962654621882 0.0 26 0.0 0.0 0.0 1.7154232624252754 0.0 27 0.0 0.0 0.0 1.7813516249471053 0.0 28 0.0 0.0 0.0 1.8589694134479833 0.0 29 0.0 0.0 0.0 1.9418474436394326 0.0 30 0.0 0.0 0.0 2.0338432260945396 0.0 31 1.1689425979047873E-4 0.0 0.0 2.1307485674608464 0.0 32 1.1689425979047873E-4 0.0 0.0 2.215380011549153 0.0 33 1.1689425979047873E-4 0.0 0.0 2.3111164103175548 0.0 34 1.1689425979047873E-4 0.0 0.0 2.4065021263065858 0.0 35 1.1689425979047873E-4 0.0 0.0 2.5212922894208356 0.0 36 1.1689425979047873E-4 0.0 0.0 2.620184833203581 0.0 37 1.1689425979047873E-4 0.0 0.0 2.721532156441926 0.0 38 1.1689425979047873E-4 0.0 0.0 2.8397122530900996 0.0 39 1.1689425979047873E-4 0.0 0.0 3.0003249660422173 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATACGA 45 3.8380676E-10 45.000004 2 CATGACG 25 3.8899667E-5 45.0 1 CACGAAC 20 7.032274E-4 45.0 32 CGCGACA 25 3.8899667E-5 45.0 27 CGTTACC 20 7.032274E-4 45.0 29 CCCAACG 20 7.032274E-4 45.0 15 ATATACG 20 7.032274E-4 45.0 1 TAACACG 35 1.211447E-7 45.0 1 AACGCGA 25 3.8899667E-5 45.0 2 TTGCGTC 55 1.8189894E-12 45.0 16 CGTAAGA 35 1.211447E-7 45.0 2 CCAACGG 20 7.032274E-4 45.0 1 TAATGCG 35 1.211447E-7 45.0 1 TAGTACG 25 3.8899667E-5 45.0 1 TCACGAC 155 0.0 43.548386 25 CGTTTTT 2610 0.0 41.982758 1 CGTTAGA 140 0.0 41.785713 2 CGACGGT 185 0.0 41.351353 28 CGCATCG 60 3.6379788E-12 41.250004 21 CTTGCGT 60 3.6379788E-12 41.250004 15 >>END_MODULE