##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546935_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1097801 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.743582853358667 31.0 31.0 34.0 30.0 34.0 2 32.1006238835636 33.0 31.0 34.0 30.0 34.0 3 32.12429301849789 33.0 31.0 34.0 30.0 34.0 4 35.873699331663936 37.0 35.0 37.0 35.0 37.0 5 35.851054061710634 37.0 35.0 37.0 35.0 37.0 6 35.89116242379083 37.0 35.0 37.0 35.0 37.0 7 36.12103650843823 37.0 35.0 37.0 35.0 37.0 8 13.185858821407523 0.0 0.0 36.0 0.0 37.0 9 24.930835369980535 18.0 17.0 39.0 17.0 39.0 10 32.65333061274311 32.0 32.0 37.0 27.0 39.0 11 35.5441049880625 37.0 35.0 37.0 32.0 39.0 12 36.603409907624425 37.0 35.0 39.0 33.0 39.0 13 36.79568063792983 39.0 35.0 39.0 33.0 39.0 14 37.98211788839689 40.0 37.0 41.0 33.0 41.0 15 38.29290554481186 40.0 37.0 41.0 33.0 41.0 16 38.39908599099473 40.0 37.0 41.0 34.0 41.0 17 38.39252013798494 40.0 37.0 41.0 34.0 41.0 18 38.33879546475181 40.0 37.0 41.0 34.0 41.0 19 38.30373628735991 40.0 37.0 41.0 34.0 41.0 20 38.28307953809479 40.0 37.0 41.0 34.0 41.0 21 38.1930869073721 40.0 37.0 41.0 34.0 41.0 22 38.14975756079654 40.0 37.0 41.0 34.0 41.0 23 38.044018906887494 40.0 36.0 41.0 34.0 41.0 24 37.95535165298629 40.0 36.0 41.0 34.0 41.0 25 37.86108411269438 40.0 36.0 41.0 33.0 41.0 26 37.80272107604201 40.0 36.0 41.0 33.0 41.0 27 37.72785504841041 40.0 36.0 41.0 33.0 41.0 28 37.687046195075425 40.0 36.0 41.0 33.0 41.0 29 37.71234677323121 40.0 36.0 41.0 33.0 41.0 30 37.64211910901885 40.0 36.0 41.0 33.0 41.0 31 37.56191604853703 40.0 36.0 41.0 33.0 41.0 32 37.43264034191989 40.0 35.0 41.0 33.0 41.0 33 37.295010662223845 40.0 35.0 41.0 32.0 41.0 34 37.142183328308136 40.0 35.0 41.0 32.0 41.0 35 37.010817078869486 40.0 35.0 41.0 31.0 41.0 36 36.90743677588197 40.0 35.0 41.0 31.0 41.0 37 36.83501563580285 40.0 35.0 41.0 31.0 41.0 38 36.76281493640469 40.0 35.0 41.0 31.0 41.0 39 36.68812653659452 40.0 35.0 41.0 31.0 41.0 40 36.59087029434296 39.0 35.0 41.0 30.0 41.0 41 36.537217583150316 39.0 35.0 41.0 30.0 41.0 42 36.4880884604769 39.0 35.0 41.0 30.0 41.0 43 36.39913609114949 39.0 35.0 41.0 30.0 41.0 44 36.237221500071506 39.0 35.0 41.0 30.0 41.0 45 36.14639538495592 39.0 35.0 40.0 30.0 41.0 46 36.14292025603912 39.0 35.0 40.0 30.0 41.0 47 36.08123967822948 39.0 35.0 40.0 30.0 41.0 48 36.013785740767226 39.0 35.0 40.0 29.0 41.0 49 35.92780203333756 38.0 35.0 40.0 29.0 41.0 50 35.825747107171516 38.0 35.0 40.0 29.0 41.0 51 35.42598430863153 38.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 2.0 13 1.0 14 10.0 15 18.0 16 50.0 17 128.0 18 282.0 19 547.0 20 1043.0 21 1679.0 22 2741.0 23 4158.0 24 6461.0 25 9496.0 26 12204.0 27 13795.0 28 14769.0 29 16355.0 30 20036.0 31 26580.0 32 35327.0 33 49104.0 34 76285.0 35 116239.0 36 116631.0 37 202150.0 38 263625.0 39 108058.0 40 26.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.423726158019534 22.588975597580983 29.60363490286491 14.383663341534577 2 32.35577304083345 24.988135372439995 29.523839020004537 13.13225256672202 3 29.15801679903735 24.810507551004235 32.62412768798716 13.40734796197125 4 26.739363509415643 26.83045469989552 31.676414942234523 14.753766848454319 5 23.71158342905499 31.190443441024374 30.436481657422433 14.661491472498204 6 21.455619005630346 39.94266720471196 27.942951409226264 10.658762380431426 7 86.94645022185259 4.006008374924052 7.095366100049098 1.9521753031742546 8 32.870620449425715 63.740240717579965 2.4841478555767393 0.9049909774175829 9 84.47095602937145 4.4876074989911645 8.086073887708247 2.9553625839291455 10 47.04932861238057 24.20475113431305 15.222339932282807 13.523580321023573 11 40.848204729272425 22.41198541447858 21.932845752554424 14.806964103694567 12 36.416253947664465 22.16558374423051 24.93994813267614 16.478214175428878 13 22.864526448782613 32.57721572489003 26.94586723823352 17.612390588093835 14 18.064567257635947 35.067739963800356 28.833458887357544 18.034233891206146 15 17.26797479688942 24.200014392408097 41.414518660485825 17.11749215021666 16 19.875551215566393 21.442866238963163 39.3929318701659 19.28865067530454 17 21.278811004908903 20.839933649176853 27.944864324226337 29.936391021687903 18 24.154195523596716 24.117485773833327 31.64808558199528 20.080233120574675 19 27.418903790395525 25.613567486274835 26.372357102972217 20.595171620357426 20 30.049526280263912 24.593163970519246 25.379189853170107 19.978119896046735 21 24.88019231172134 26.92619154108987 28.367163083291054 19.826453063897738 22 24.39777336693991 22.585149767580827 28.618574769015513 24.398502096463748 23 21.612113670874777 26.959348734424545 28.196367101141284 23.232170493559398 24 22.1167588661333 24.888845974816928 34.28790828210213 18.706486876947643 25 20.9823091798969 25.057911224347585 32.52338083131642 21.436398764439094 26 19.909437138424906 30.64234774790695 27.33127406515388 22.116941048514256 27 19.48422346126484 29.730798204774818 30.70793340505246 20.07704492890788 28 17.819987411197474 26.763684857273766 36.08723256765115 19.329095163877604 29 18.789379860284335 25.358785426502617 34.88328030307861 20.96855441013444 30 21.209763882525156 26.982212623234997 31.667670187948456 20.140353306291395 31 27.851131489222546 24.853047136958338 27.06055104704769 20.235270326771428 32 28.150183867567986 25.83355271128374 27.52229229159019 18.49397112955809 33 26.435392206784293 26.111289751056887 26.935847207280737 20.517470834878086 34 20.91052932179876 27.26076948372246 29.21759043761119 22.611110756867593 35 21.938584497554654 26.079954381531806 30.140799653124745 21.840661467788788 36 28.401777735673406 24.773251254097964 27.15856516800404 19.666405842224595 37 22.25549074923415 29.50552969071808 28.134060726853043 20.104918833194724 38 22.15774990184924 30.166487368840073 25.651916877466864 22.023845851843824 39 22.059189233750015 28.95779836236258 27.23826995967393 21.74474244421348 40 23.52184047928541 26.3669827227339 26.887113420374003 23.224063377606686 41 20.21878282129457 25.375364023169954 27.862882252794453 26.542970902741025 42 22.93193392973772 26.575672640123297 26.299757424159754 24.192636005979224 43 22.804588445446853 26.644719762507048 26.438398216070127 24.112293575975976 44 21.477571982536 28.579952104252044 28.542422533774335 21.400053379437622 45 20.583967403928398 31.727152735331813 25.160844269589845 22.528035591149944 46 23.22934666665452 28.945318869266835 27.19245109086255 20.632883373216092 47 22.41918161852649 27.329907697296683 27.73763186588462 22.513278818292203 48 23.529309956904758 25.45488663245889 29.41589595928588 21.59990745135047 49 22.089886964941734 24.73198694481058 30.33017823813241 22.847947852115276 50 21.54261109253863 29.032219864984636 27.981209709227812 21.443959333248923 51 20.878738496321283 30.60827964266748 26.53012704488336 21.98285481612788 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 645.0 1 1276.5 2 1908.0 3 6630.5 4 11353.0 5 8095.0 6 4837.0 7 4809.5 8 4782.0 9 4915.0 10 5048.0 11 4949.0 12 4850.0 13 4646.5 14 4443.0 15 4248.0 16 4053.0 17 3965.5 18 3878.0 19 3792.0 20 3706.0 21 3858.0 22 4010.0 23 4760.5 24 5511.0 25 6231.5 26 8309.5 27 9667.0 28 11249.0 29 12831.0 30 15475.0 31 18119.0 32 20279.0 33 22439.0 34 25364.5 35 28290.0 36 33156.5 37 38023.0 38 47692.0 39 57361.0 40 69890.5 41 82420.0 42 88092.0 43 93764.0 44 92578.5 45 91393.0 46 91889.0 47 92385.0 48 88563.5 49 84742.0 50 80821.5 51 76901.0 52 72364.0 53 67827.0 54 63062.0 55 58297.0 56 55041.0 57 51785.0 58 48253.0 59 44721.0 60 39393.0 61 34065.0 62 28774.0 63 23483.0 64 19913.0 65 16343.0 66 13547.0 67 10751.0 68 8747.5 69 6744.0 70 5545.0 71 4346.0 72 3486.0 73 2626.0 74 1993.5 75 959.0 76 557.0 77 428.0 78 299.0 79 226.0 80 153.0 81 112.5 82 72.0 83 50.5 84 29.0 85 23.0 86 17.0 87 14.0 88 11.0 89 6.5 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1097801.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.783878887302258 #Duplication Level Percentage of deduplicated Percentage of total 1 73.14334570243928 17.39632475598896 2 5.735944283526448 2.728460082874135 3 2.498728486919427 1.7828836711543103 4 1.672282023753587 1.5909341247347213 5 1.3074405787014753 1.5548004188090134 6 1.149058471973538 1.6397440519108333 7 0.962001216375495 1.6016084293798558 8 0.8732256394162178 1.6614954279329919 9 0.8223844326089592 1.7603542569576844 >10 11.272411774565091 58.65115935658228 >50 0.5311611473797699 7.692871155577009 >100 0.030473290902590044 1.1973434440110968 >500 3.857378595264335E-4 0.04669740349410969 >1k 0.0011572135785793006 0.69532342059304 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4195 0.38212754406308613 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2267 0.2065037288178823 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1117 0.10174885976602316 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.009928939762306648 0.0 2 0.0 0.0 0.0 0.03261064619179615 0.0 3 0.0 0.0 0.0 0.04882487809721434 0.0 4 0.0 0.0 0.0 0.0793404269079733 0.0 5 0.0 0.0 0.0 0.1465657254821229 0.0 6 0.0 0.0 0.0 0.2185277659612261 0.0 7 0.0 0.0 0.0 0.2627069933439667 0.0 8 0.0 0.0 0.0 0.363636032395671 0.0 9 0.0 0.0 0.0 0.4753138319240008 0.0 10 0.0 0.0 0.0 0.6930217771709081 0.0 11 0.0 0.0 0.0 0.89232930194088 0.0 12 0.0 0.0 0.0 1.0716878559957588 0.0 13 0.0 0.0 0.0 1.1416458902843047 0.0 14 0.0 0.0 0.0 1.171068344809305 0.0 15 0.0 0.0 0.0 1.2126059276681294 0.0 16 0.0 0.0 0.0 1.2993247410049726 0.0 17 0.0 0.0 0.0 1.4056281602949896 0.0 18 0.0 0.0 0.0 1.545999684824481 0.0 19 0.0 0.0 0.0 1.6246113822086152 0.0 20 0.0 0.0 0.0 1.6988507024497155 0.0 21 0.0 0.0 0.0 1.812805781740042 0.0 22 0.0 0.0 0.0 1.9248479460302914 0.0 23 0.0 0.0 0.0 2.0542885277021976 0.0 24 0.0 0.0 0.0 2.1560373874682206 0.0 25 0.0 0.0 0.0 2.2391125531858687 0.0 26 0.0 0.0 0.0 2.3257402753322323 0.0 27 0.0 0.0 0.0 2.409908535335639 0.0 28 0.0 0.0 0.0 2.505463194149031 0.0 29 0.0 0.0 0.0 2.605572412486416 0.0 30 0.0 0.0 0.0 2.7277256989199317 0.0 31 0.0 0.0 0.0 2.8334825710670697 0.0 32 0.0 0.0 0.0 2.9405147198809254 0.0 33 0.0 0.0 0.0 3.053923252028373 0.0 34 0.0 0.0 0.0 3.173070529176053 0.0 35 0.0 0.0 0.0 3.306792396800513 0.0 36 0.0 0.0 0.0 3.4206563849003597 0.0 37 0.0 0.0 0.0 3.5375263822860425 0.0 38 0.0 0.0 0.0 3.6727968001486606 0.0 39 0.0 0.0 0.0 3.855616819441775 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTAGCG 70 0.0 45.0 1 TATATCG 20 7.0331484E-4 45.0 27 CAAATCG 35 1.2118653E-7 45.0 1 TATACGC 20 7.0331484E-4 45.0 12 ATTACCG 30 2.1654123E-6 44.999996 1 ACAATCG 30 2.1654123E-6 44.999996 14 TAATCGC 30 2.1654123E-6 44.999996 16 CGGTCTA 200 0.0 43.875 31 AGCGATA 120 0.0 43.124996 8 CGTTTTT 3840 0.0 42.656246 1 GCGTAAG 75 0.0 42.000004 1 CGACGGT 215 0.0 41.860462 28 TATACGA 60 3.6379788E-12 41.249996 2 TCTAGCG 55 6.184564E-11 40.909092 1 AGGGGAA 9705 0.0 40.479137 8 GAGGGGA 9555 0.0 40.149136 7 TACGTAG 45 1.9281288E-8 40.000004 1 GCGATAA 75 0.0 39.000004 9 GAGACCG 180 0.0 38.750004 7 GAGCGAT 690 0.0 38.47826 7 >>END_MODULE