##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546934_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1170257 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.75880853521919 31.0 31.0 34.0 30.0 34.0 2 32.11218048685033 33.0 31.0 34.0 30.0 34.0 3 32.057847976982835 33.0 31.0 34.0 30.0 34.0 4 35.8444307532448 37.0 35.0 37.0 35.0 37.0 5 35.86188332990104 37.0 35.0 37.0 35.0 37.0 6 35.91401034131819 37.0 35.0 37.0 35.0 37.0 7 36.147034369373564 37.0 35.0 37.0 35.0 37.0 8 13.294243913943689 0.0 0.0 37.0 0.0 37.0 9 24.98263800173808 18.0 17.0 39.0 17.0 39.0 10 32.73716029897706 32.0 32.0 38.0 27.0 39.0 11 35.59585116773495 37.0 35.0 37.0 32.0 39.0 12 36.709397166605285 38.0 35.0 39.0 33.0 39.0 13 36.98455211120292 39.0 37.0 39.0 33.0 39.0 14 38.17608867112096 40.0 37.0 41.0 33.0 41.0 15 38.442917239546524 40.0 38.0 41.0 34.0 41.0 16 38.514846738793274 40.0 38.0 41.0 34.0 41.0 17 38.49385305962707 40.0 38.0 41.0 34.0 41.0 18 38.41621199445934 40.0 37.0 41.0 34.0 41.0 19 38.35775304057143 40.0 37.0 41.0 34.0 41.0 20 38.29721847423259 40.0 37.0 41.0 34.0 41.0 21 38.246674021176545 40.0 37.0 41.0 34.0 41.0 22 38.204831075567164 40.0 37.0 41.0 34.0 41.0 23 38.04166947943913 40.0 36.0 41.0 34.0 41.0 24 37.83406294514795 40.0 35.0 41.0 34.0 41.0 25 37.727582061034454 40.0 35.0 41.0 33.0 41.0 26 37.65987471128137 40.0 35.0 41.0 33.0 41.0 27 37.61812490760577 40.0 35.0 41.0 33.0 41.0 28 37.531341406203936 40.0 35.0 41.0 33.0 41.0 29 37.50146848085506 40.0 35.0 41.0 33.0 41.0 30 37.362149510748495 40.0 35.0 41.0 33.0 41.0 31 37.245525555497636 40.0 35.0 41.0 33.0 41.0 32 37.00660453216687 40.0 35.0 41.0 32.0 41.0 33 36.71783719302683 40.0 35.0 41.0 31.0 41.0 34 36.39826465468696 40.0 35.0 41.0 30.0 41.0 35 36.150904459447794 40.0 35.0 41.0 29.0 41.0 36 35.99779877411543 40.0 35.0 41.0 27.0 41.0 37 35.93231828564153 40.0 35.0 41.0 27.0 41.0 38 35.84242948343825 39.0 35.0 41.0 27.0 41.0 39 35.754369339384425 39.0 35.0 41.0 26.0 41.0 40 35.64465925006217 39.0 35.0 41.0 25.0 41.0 41 35.58420073539402 39.0 35.0 41.0 25.0 41.0 42 35.51514069131823 39.0 35.0 41.0 24.0 41.0 43 35.41656832644453 39.0 35.0 41.0 24.0 41.0 44 35.23689839069538 39.0 35.0 40.0 23.0 41.0 45 35.159408574355886 38.0 35.0 40.0 23.0 41.0 46 35.12563052389347 38.0 35.0 40.0 23.0 41.0 47 35.096013097977625 38.0 35.0 40.0 23.0 41.0 48 35.023815281600534 38.0 35.0 40.0 23.0 41.0 49 34.93486046227453 38.0 34.0 40.0 24.0 41.0 50 34.83518577543224 38.0 34.0 40.0 23.0 41.0 51 34.47345326710287 38.0 34.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 1.0 12 1.0 13 6.0 14 11.0 15 21.0 16 48.0 17 151.0 18 337.0 19 671.0 20 1367.0 21 2430.0 22 3894.0 23 6430.0 24 10665.0 25 16533.0 26 21484.0 27 22345.0 28 21150.0 29 21051.0 30 23120.0 31 28534.0 32 36823.0 33 51073.0 34 77378.0 35 115469.0 36 119671.0 37 207319.0 38 266134.0 39 116115.0 40 24.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.22801230840747 22.371410724310984 27.913184881611475 18.48739208567007 2 35.545781823992506 23.44185935226194 28.639862867729054 12.372495956016499 3 28.375561949212862 23.647797022363466 35.70472127062688 12.271919757796791 4 25.216255916435447 25.24599297419285 35.09391526818468 14.443835841187022 5 22.252377041965996 30.041520794150344 33.69191553650181 14.01418662738185 6 20.294516503639798 38.52376016550211 31.240830005716692 9.940893325141401 7 82.70439741014152 3.8415493348896863 11.763398979882195 1.6906542750865834 8 31.334741001335605 63.450934281956876 4.325289231339783 0.8890354853677441 9 79.41939249241832 4.851242077594922 12.822568034201035 2.906797395785712 10 42.76744339063983 26.23936451565767 19.422827635297203 11.57036445840529 11 34.92719975184938 22.578032004935668 27.01218621208846 15.482582031126496 12 31.10598783002366 21.203205791548353 31.088299407736937 16.602506970691053 13 22.95333418214973 27.62683752372342 32.255649827345614 17.16417846678123 14 18.16353160032369 30.763242603975023 33.3570318314695 17.71619396423179 15 17.919140838294496 24.38208017555118 41.122761923235664 16.57601706291866 16 21.163385478574366 22.12103837020415 39.23813316220283 17.477442989018652 17 21.190302642923733 21.869384246366398 31.840954593734537 25.09935851697533 18 23.28155268458125 23.889795147561603 34.23871850371329 18.58993366414386 19 25.598906906773472 25.540543658358807 30.140131612115972 18.720417822751752 20 26.6994343977434 24.826768820865844 30.009134745615707 18.46466203577505 21 24.27646234972318 25.646246935502205 32.25317173919917 17.824118975575452 22 22.93308222040116 22.400293268914435 32.66427801756366 22.002346493120744 23 20.998293537231564 26.66892827814745 31.830016825363998 20.502761359256983 24 21.61115037124324 24.411389976731606 35.49271655713232 18.48474309489283 25 21.31318163446149 24.670563816324105 34.37680782939132 19.63944671982308 26 19.312680889753274 28.472121935609017 31.08342868275943 21.13176849187828 27 19.35327026456582 26.970400518860387 33.90947458549703 19.766854631076765 28 18.20907715142913 26.292686136464045 36.96025744772302 18.537979264383804 29 19.38463089731572 25.809117142644734 35.7538557769789 19.052396183060644 30 20.85311175237576 25.510208441393644 34.95531323461428 18.68136657161632 31 25.943702964391584 24.22399524207076 31.00566798575014 18.82663380778752 32 25.96173319193989 25.2435148860464 30.778367486799908 18.0163844352138 33 25.055521992177788 25.057060115854895 30.080999301862754 19.806418590104567 34 20.80047374209255 26.57023200886643 31.765073825663936 20.864220423377088 35 20.575651331288768 26.793174490731523 31.84804705291231 20.7831271250674 36 25.363317630229943 26.317979725820912 29.321764364579746 18.996938279369406 37 21.803501282196986 29.232638642622945 28.839562591806754 20.12429748337331 38 21.87861298842904 30.897913877037265 26.40086750175389 20.82260563277981 39 21.752999554798645 27.97599159842667 28.63516304538234 21.635845801392346 40 22.595805878537792 26.063334805944333 28.956630893897668 22.384228421620207 41 20.399877975521616 25.667866118297095 29.49805042823927 24.434205477942026 42 22.144879287199306 27.260336831995026 27.50353127560869 23.091252605196978 43 21.70856487079334 26.876831328503055 28.083232999247176 23.331370801456433 44 20.869774758877753 28.064433709860314 30.022208796871112 21.043582734390824 45 20.898742754796594 29.829943337232763 27.726815562735364 21.544498345235276 46 22.42216880565551 28.51416398278327 28.870325065348894 20.193342146212327 47 21.820591545275953 27.28084514768978 29.512833505802572 21.385729801231694 48 22.106084390010057 26.340966129662117 30.486978501303557 21.065970979024264 49 21.419055814235676 25.36434304601468 31.35166036178378 21.864940777965867 50 20.463026497598392 28.086138343970596 30.22575383014158 21.225081328289427 51 19.75241335877504 28.98517163323954 29.298008898899987 21.96440610908544 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 767.0 1 1461.5 2 2156.0 3 16772.5 4 31389.0 5 21144.5 6 10900.0 7 10771.5 8 10643.0 9 10709.0 10 10775.0 11 10651.0 12 10527.0 13 9928.0 14 9329.0 15 8760.0 16 8191.0 17 7772.0 18 7353.0 19 7125.5 20 6898.0 21 6809.0 22 6720.0 23 7236.0 24 7752.0 25 8994.0 26 11296.0 27 12356.0 28 14369.5 29 16383.0 30 18716.5 31 21050.0 32 23581.5 33 26113.0 34 28862.0 35 31611.0 36 36405.0 37 41199.0 38 49065.0 39 56931.0 40 64902.0 41 72873.0 42 77998.0 43 83123.0 44 85132.0 45 87141.0 46 88808.5 47 90476.0 48 88475.5 49 86475.0 50 81664.0 51 76853.0 52 71527.0 53 66201.0 54 61930.5 55 57660.0 56 54891.0 57 52122.0 58 49779.0 59 47436.0 60 42157.0 61 36878.0 62 31779.0 63 26680.0 64 22127.0 65 17574.0 66 14548.0 67 11522.0 68 9578.0 69 7634.0 70 6192.5 71 4751.0 72 3801.5 73 2852.0 74 2167.5 75 1090.5 76 698.0 77 501.0 78 304.0 79 213.0 80 122.0 81 100.5 82 79.0 83 53.5 84 28.0 85 16.5 86 5.0 87 3.5 88 2.0 89 2.5 90 3.0 91 2.0 92 1.0 93 1.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1170257.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.54116173996908 #Duplication Level Percentage of deduplicated Percentage of total 1 71.51785873757957 21.84238491000679 2 6.9662128391783416 4.255124660727899 3 3.464352392164844 3.1741604020006595 4 2.361039657885532 2.884355762638532 5 1.9385011714641336 2.960203890540282 6 1.5677145030123223 2.8727893319156745 7 1.336038456873379 2.8562916621532 8 1.1373087104540693 2.7787783419402716 9 0.9922016797357439 2.7272692781530523 >10 8.575986966851957 48.325303213472615 >50 0.11697874027140195 2.2019233316055162 >100 0.024123135109866935 1.278858447713471 >500 0.0011220062792841293 0.2076602940081977 >1k 0.0 0.0 >5k 2.805015698210323E-4 0.5925685864912144 >10k+ 2.805015698210323E-4 1.0423278866327317 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12167 1.0396861544088178 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6917 0.5910667485859944 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.563539461844706E-4 0.0 0.0 0.006152494708427294 0.0 2 2.563539461844706E-4 0.0 0.0 0.020508315694757646 0.0 3 2.563539461844706E-4 0.0 0.0 0.036060455096615526 0.0 4 2.563539461844706E-4 0.0 0.0 0.053919780014133646 0.0 5 2.563539461844706E-4 0.0 0.0 0.10373789688931577 0.0 6 2.563539461844706E-4 0.0 0.0 0.18927466359953413 0.0 7 2.563539461844706E-4 0.0 0.0 0.25361950409183626 0.0 8 2.563539461844706E-4 0.0 0.0 0.35693014440417786 0.0 9 2.563539461844706E-4 0.0 0.0 0.5232184041625044 0.0 10 2.563539461844706E-4 0.0 0.0 0.7404356478961459 0.0 11 2.563539461844706E-4 0.0 0.0 0.9372300272504245 0.0 12 2.563539461844706E-4 0.0 0.0 1.1059963751552009 0.0 13 2.563539461844706E-4 0.0 0.0 1.184440682687649 0.0 14 2.563539461844706E-4 0.0 0.0 1.221184748307423 0.0 15 2.563539461844706E-4 0.0 0.0 1.2576724599810127 0.0 16 2.563539461844706E-4 0.0 0.0 1.3230427162580527 0.0 17 2.563539461844706E-4 0.0 0.0 1.40182882905208 0.0 18 2.563539461844706E-4 0.0 0.0 1.5210334140278587 0.0 19 2.563539461844706E-4 0.0 0.0 1.5851219005739765 0.0 20 2.563539461844706E-4 0.0 0.0 1.6581827752365506 0.0 21 2.563539461844706E-4 0.0 0.0 1.7462830814086137 0.0 22 2.563539461844706E-4 0.0 0.0 1.8395104665043662 0.0 23 2.563539461844706E-4 0.0 0.0 1.950938981779216 0.0 24 2.563539461844706E-4 0.0 0.0 2.0305796077271916 0.0 25 2.563539461844706E-4 0.0 0.0 2.1038113850205553 0.0 26 2.563539461844706E-4 0.0 0.0 2.177897675467867 0.0 27 2.563539461844706E-4 0.0 0.0 2.2599309382468977 0.0 28 2.563539461844706E-4 0.0 0.0 2.34606586416488 0.0 29 2.563539461844706E-4 0.0 0.0 2.432884400606021 0.0 30 2.563539461844706E-4 0.0 0.0 2.549525446119955 0.0 31 2.563539461844706E-4 0.0 0.0 2.6528360864322966 0.0 32 2.563539461844706E-4 0.0 0.0 2.7500796833516055 0.0 33 2.563539461844706E-4 0.0 0.0 2.8568083762797403 0.0 34 2.563539461844706E-4 0.0 0.0 2.9570427692378685 0.0 35 2.563539461844706E-4 0.0 0.0 3.084023423914576 0.0 36 2.563539461844706E-4 0.0 0.0 3.1946828773508726 0.0 37 2.563539461844706E-4 0.0 0.0 3.3132893031188875 0.0 38 2.563539461844706E-4 0.0 0.0 3.4556511945666637 0.0 39 2.563539461844706E-4 0.0 0.0 3.659708935729502 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAACGCC 40 6.8157533E-9 45.000004 12 TATAGCG 40 6.8157533E-9 45.000004 1 GCGAATA 25 3.890849E-5 45.0 15 CGTTTTT 9655 0.0 44.18436 1 ATTGCGA 85 0.0 42.35294 2 TCACGAC 150 0.0 42.0 25 CGACGGT 150 0.0 42.0 28 AGCGATA 150 0.0 42.0 8 GTTTTTA 6760 0.0 41.838017 2 ATACGAG 245 0.0 41.32653 3 ACGACGG 155 0.0 40.64516 27 CGCATCG 50 1.0822987E-9 40.5 21 GCGATAT 95 0.0 40.26316 9 GAGCGAT 750 0.0 39.9 7 CGTAAGA 120 0.0 39.375004 2 TAGCGGA 75 0.0 39.0 2 TACACGC 255 0.0 38.82353 35 ACACGCG 250 0.0 38.699997 36 TAAGCGA 70 0.0 38.57143 2 TCGTAGA 100 0.0 38.25 2 >>END_MODULE