SRR1546933_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546933_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	692166
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1886	0.2724779893840495	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1704	0.24618371893447527	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	986	0.1424513772707703	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGAC	35	1.2109922E-7	45.000004	25
ACGTTAG	35	1.2109922E-7	45.000004	1
TGGTTAG	35	1.2109922E-7	45.000004	1
TATAGCG	70	0.0	45.000004	1
ACGTAAG	35	1.2109922E-7	45.000004	1
CGACTTA	35	1.2109922E-7	45.000004	28
GTCATAG	20	7.0313405E-4	45.0	9
CGTGGTA	25	3.889193E-5	45.0	38
CGGAAAT	25	3.889193E-5	45.0	5
GGTACGC	20	7.0313405E-4	45.0	9
TGCCCCG	20	7.0313405E-4	45.0	40
CGTATCT	20	7.0313405E-4	45.0	34
TTAATCT	25	3.889193E-5	45.0	15
ACGTTCA	20	7.0313405E-4	45.0	17
GTTTACG	55	1.8189894E-12	45.0	1
CGATTCC	20	7.0313405E-4	45.0	22
CACGACC	25	3.889193E-5	45.0	37
GACCCTC	45	3.8380676E-10	45.0	9
TAGCCCG	25	3.889193E-5	45.0	1
GTTACGA	25	3.889193E-5	45.0	2