##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546933_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 692166 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.796125495907052 31.0 31.0 34.0 30.0 34.0 2 32.13917181716525 33.0 31.0 34.0 30.0 34.0 3 32.155201208958545 33.0 31.0 34.0 30.0 34.0 4 35.86501792922507 37.0 35.0 37.0 35.0 37.0 5 35.838323465758215 37.0 35.0 37.0 35.0 37.0 6 35.895955594467225 37.0 35.0 37.0 35.0 37.0 7 36.14951760126906 37.0 35.0 37.0 35.0 37.0 8 13.233000465206324 0.0 0.0 37.0 0.0 37.0 9 24.9952135759341 18.0 17.0 39.0 17.0 39.0 10 32.86912821490798 32.0 32.0 38.0 27.0 39.0 11 35.722290606588594 37.0 35.0 37.0 32.0 39.0 12 36.451329594345864 37.0 35.0 39.0 33.0 39.0 13 36.357040074201855 38.0 35.0 39.0 33.0 39.0 14 37.46593302762632 39.0 35.0 41.0 33.0 41.0 15 37.93921544831731 40.0 36.0 41.0 33.0 41.0 16 38.14118000595233 40.0 36.0 41.0 34.0 41.0 17 38.16540829800944 40.0 36.0 41.0 34.0 41.0 18 38.117308564708466 40.0 36.0 41.0 34.0 41.0 19 38.07056399765374 40.0 36.0 41.0 34.0 41.0 20 38.0334746289185 40.0 36.0 41.0 34.0 41.0 21 37.91840107719825 40.0 35.0 41.0 34.0 41.0 22 37.86473042593828 40.0 35.0 41.0 33.0 41.0 23 37.803463331050644 40.0 35.0 41.0 33.0 41.0 24 37.72954609154451 40.0 35.0 41.0 33.0 41.0 25 37.628509634971955 40.0 35.0 41.0 33.0 41.0 26 37.52738360451106 40.0 35.0 41.0 33.0 41.0 27 37.42047138981111 39.0 35.0 41.0 33.0 41.0 28 37.45265731052955 39.0 35.0 41.0 33.0 41.0 29 37.53066894357712 40.0 35.0 41.0 33.0 41.0 30 37.47169031706267 40.0 35.0 41.0 33.0 41.0 31 37.34196710037766 40.0 35.0 41.0 33.0 41.0 32 37.13754359503356 39.0 35.0 41.0 33.0 41.0 33 36.997185646217815 39.0 35.0 41.0 32.0 41.0 34 36.90082292398066 39.0 35.0 41.0 32.0 41.0 35 36.80610720549695 39.0 35.0 41.0 32.0 41.0 36 36.67501004094394 39.0 35.0 41.0 31.0 41.0 37 36.56336341282294 39.0 35.0 41.0 31.0 41.0 38 36.51153769471485 39.0 35.0 41.0 31.0 41.0 39 36.49123042738303 39.0 35.0 41.0 31.0 41.0 40 36.34170849189356 39.0 35.0 41.0 30.0 41.0 41 36.36637598495159 39.0 35.0 41.0 31.0 41.0 42 36.31501113894644 39.0 35.0 41.0 31.0 41.0 43 36.217897151839296 39.0 35.0 41.0 30.0 41.0 44 36.02798895062745 38.0 35.0 40.0 30.0 41.0 45 35.92203748811701 38.0 35.0 40.0 30.0 41.0 46 35.92085569068691 38.0 35.0 40.0 30.0 41.0 47 35.891723950613006 38.0 35.0 40.0 30.0 41.0 48 35.871642062742175 38.0 35.0 40.0 30.0 41.0 49 35.83027626320854 38.0 35.0 40.0 29.0 41.0 50 35.670152824611435 38.0 35.0 40.0 29.0 41.0 51 35.20494505653268 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 3.0 13 4.0 14 5.0 15 7.0 16 22.0 17 77.0 18 165.0 19 290.0 20 651.0 21 1158.0 22 1773.0 23 2803.0 24 4205.0 25 6036.0 26 8107.0 27 8926.0 28 9261.0 29 10623.0 30 12937.0 31 17173.0 32 23097.0 33 32802.0 34 54961.0 35 93211.0 36 67259.0 37 116549.0 38 169391.0 39 50658.0 40 11.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.501113894643773 22.982059217008636 31.51772840619158 13.999098482156015 2 29.962176703276384 25.49489573310449 32.100825524512906 12.442102039106226 3 29.581487677811392 24.2873819286125 32.83128613656262 13.29984425701349 4 25.295088172490416 28.067400016758988 32.74286804032558 13.894643770425013 5 22.62968709818165 31.89162715302399 31.372098600624703 14.106587148169659 6 21.591063415423466 40.071890269097295 27.337083878722733 10.999962436756501 7 88.6200709078458 4.310382191555205 5.795286101888853 1.274260798710136 8 33.741183473328654 63.57680094081477 1.9532886619683716 0.7287269238882003 9 88.05720015140876 3.7345087739068377 6.097670212058957 2.1106208626254395 10 61.5473744737534 19.789327993573796 10.39736132661818 8.265936206054617 11 56.116451833808654 16.547909027603204 16.295657400103444 11.039981738484698 12 48.432168005940774 20.085210773138236 19.724314687517154 11.758306533403836 13 20.803824516084294 47.72569008012529 20.221738715857178 11.248746687933242 14 12.928690516436808 49.389886241161804 25.850879702267953 11.830543540133435 15 11.466469026216254 22.294218438929388 54.10262856020087 12.13668397465348 16 13.63906924061569 16.001074886660135 53.001158681587945 17.35869719113623 17 14.672491858889341 15.981137472802768 27.39602927621409 41.950341392093804 18 20.608495649887455 21.224099421237103 36.21631227191165 21.95109265696379 19 30.126877078619867 23.144592482150237 25.46311145014346 21.26541898908643 20 34.30679923602142 21.58875183120812 23.206282885897313 20.898166046873147 21 22.7796511241523 28.71926676548689 27.340262307018836 21.160819803341973 22 22.603392827732076 22.6783748407174 25.30693504159407 29.411297289956455 23 18.04567112513472 30.955868967848755 24.409751418012444 26.58870848900408 24 19.390724190439865 23.418948633709256 40.70743145430431 16.482895721546566 25 15.47388921154752 23.004308215081355 39.49587237743547 22.025930195935654 26 14.241381402727091 38.158765382870584 26.982833597720777 20.61701961668155 27 15.929271301970916 36.84231817223036 29.745610157101044 17.48280036869768 28 12.99890488697798 27.760103790131268 43.724915699413145 15.516075623477604 29 12.939381593432788 22.953742310370632 43.400860487224165 20.706015608972415 30 16.87167529176527 31.228491431246262 33.713588936757944 18.186244340230523 31 32.68276685072656 25.116807239881762 23.59130613176608 18.609119777625597 32 32.76511703839831 26.454636604513947 25.415579499715385 15.364666857372363 33 29.817124793763345 27.770361445086873 23.955091697656343 18.45742206349344 34 19.037196279505206 29.099088946871127 26.48815457563648 25.37556019798719 35 18.514633772823284 25.6372026363618 32.5664652698919 23.281698320923017 36 33.37407500512883 21.64292958625532 27.8226610379591 17.16033437065675 37 20.492627491093177 32.216982631334105 29.342094237509496 17.948295640063222 38 20.14531196273726 34.077952398702045 22.8228488541766 22.953886784384093 39 19.62087129388037 31.714935434563387 27.681943348849842 20.9822499227064 40 24.407584307810552 26.405515439937822 24.099132289075165 25.087767963176468 41 17.415475478425694 22.473510689632256 27.17036086719082 32.94065296475123 42 23.181288881568875 23.432240242947504 23.750660968611577 29.63580990687205 43 23.340210296373993 25.68733511903214 24.161689536902998 26.81076504769087 44 19.121569103365378 31.15278704819364 28.40705842240156 21.31858542603942 45 16.33408748768359 40.93324433734104 20.96693567727973 21.765732497695637 46 23.31723892823398 33.526206141301365 24.684974413652217 18.47158051681244 47 21.89662595388967 27.555239639046125 25.55543034474389 24.99270406232031 48 23.67582342963971 23.25034746000237 31.21606666608877 21.85776244426915 49 21.49311003429813 21.159519537220838 34.17489446173317 23.17247596674786 50 19.426987167818126 33.78625936552792 26.280111996255233 20.50664147039872 51 17.88877234651803 36.55972700190417 23.098071849816375 22.453428801761426 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 897.0 1 1012.0 2 1127.0 3 2978.5 4 4830.0 5 3634.5 6 2439.0 7 2732.5 8 3026.0 9 3154.0 10 3282.0 11 3347.0 12 3412.0 13 3189.5 14 2967.0 15 2760.0 16 2553.0 17 2464.5 18 2376.0 19 2403.5 20 2431.0 21 2350.0 22 2269.0 23 2385.5 24 2502.0 25 2987.0 26 4090.0 27 4708.0 28 5925.0 29 7142.0 30 8309.0 31 9476.0 32 10353.0 33 11230.0 34 12745.0 35 14260.0 36 17727.0 37 21194.0 38 32110.0 39 43026.0 40 56556.5 41 70087.0 42 74894.5 43 79702.0 44 75762.5 45 71823.0 46 68550.5 47 65278.0 48 61024.5 49 56771.0 50 52604.0 51 48437.0 52 42846.5 53 37256.0 54 32698.0 55 28140.0 56 25612.5 57 23085.0 58 21115.5 59 19146.0 60 16703.5 61 14261.0 62 12482.0 63 10703.0 64 9025.5 65 7348.0 66 6000.5 67 4653.0 68 3682.0 69 2711.0 70 2333.5 71 1956.0 72 1521.5 73 1087.0 74 829.0 75 436.0 76 301.0 77 224.0 78 147.0 79 94.0 80 41.0 81 30.0 82 19.0 83 17.5 84 16.0 85 10.5 86 5.0 87 2.5 88 0.0 89 0.5 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 692166.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.224399034401102 #Duplication Level Percentage of deduplicated Percentage of total 1 77.97316468769456 16.54933561306703 2 4.9211495790711295 2.0889688474836134 3 1.7889673031273208 1.1390926770321197 4 1.0538775743848028 0.8947167268859915 5 0.7689997793816753 0.8160779087481547 6 0.6251470602722087 0.7961022397440093 7 0.546976527541518 0.8126473658094586 8 0.4656847801751757 0.7907103678948232 9 0.44293202470936993 0.8460869433792189 >10 9.871057084638663 52.04410619175308 >50 1.4325331791897455 19.407990553725977 >100 0.10677265931849035 3.056154559241975 >500 0.0013688802476729532 0.2364967973403335 >1k 0.0013688802476729532 0.5215132078942243 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1886 0.2724779893840495 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1704 0.24618371893447527 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 986 0.1424513772707703 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.013291609238246316 0.0 2 0.0 0.0 0.0 0.04131956784933094 0.0 3 0.0 0.0 0.0 0.0625572478278332 0.0 4 0.0 0.0 0.0 0.10012049132722498 0.0 5 0.0 0.0 0.0 0.16513379738386458 0.0 6 0.0 0.0 0.0 0.2379487001673009 0.0 7 0.0 0.0 0.0 0.2831690663800302 0.0 8 0.0 0.0 0.0 0.37447664288624405 0.0 9 0.0 0.0 0.0 0.46997396578277467 0.0 10 0.0 0.0 0.0 0.6494106904990999 0.0 11 0.0 0.0 0.0 0.8665551327282761 0.0 12 0.0 0.0 0.0 1.0494592337676223 0.0 13 0.0 0.0 0.0 1.12198518852414 0.0 14 0.0 0.0 0.0 1.1469791928525817 0.0 15 0.0 0.0 0.0 1.1969672015094646 0.0 16 0.0 0.0 0.0 1.3012774392270063 0.0 17 0.0 0.0 0.0 1.4141116437386407 0.0 18 0.0 0.0 0.0 1.6133413082988763 0.0 19 0.0 0.0 0.0 1.6903459574726294 0.0 20 0.0 0.0 0.0 1.7722627231039954 0.0 21 0.0 0.0 0.0 1.8892866740059466 0.0 22 0.0 0.0 0.0 1.9908519054677636 0.0 23 0.0 0.0 0.0 2.124779315944441 0.0 24 0.0 0.0 0.0 2.217531632585247 0.0 25 0.0 0.0 0.0 2.280955724493835 0.0 26 0.0 0.0 0.0 2.3625835420982826 0.0 27 0.0 0.0 0.0 2.430197380397188 0.0 28 0.0 0.0 0.0 2.5037346532479203 0.0 29 0.0 0.0 0.0 2.5878185290811744 0.0 30 0.0 0.0 0.0 2.7087432783465237 0.0 31 0.0 0.0 0.0 2.825622755235016 0.0 32 0.0 0.0 0.0 2.9102845271221067 0.0 33 0.0 0.0 0.0 3.0024589477090755 0.0 34 0.0 0.0 0.0 3.1025794390363006 0.0 35 0.0 0.0 0.0 3.2544216271819186 0.0 36 0.0 0.0 0.0 3.3578650208187053 0.0 37 0.0 0.0 0.0 3.4624642065631654 0.0 38 0.0 0.0 0.0 3.5614289057827166 0.0 39 0.0 0.0 0.0 3.668195201729065 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATCGAC 35 1.2109922E-7 45.000004 25 ACGTTAG 35 1.2109922E-7 45.000004 1 TGGTTAG 35 1.2109922E-7 45.000004 1 TATAGCG 70 0.0 45.000004 1 ACGTAAG 35 1.2109922E-7 45.000004 1 CGACTTA 35 1.2109922E-7 45.000004 28 GTCATAG 20 7.0313405E-4 45.0 9 CGTGGTA 25 3.889193E-5 45.0 38 CGGAAAT 25 3.889193E-5 45.0 5 GGTACGC 20 7.0313405E-4 45.0 9 TGCCCCG 20 7.0313405E-4 45.0 40 CGTATCT 20 7.0313405E-4 45.0 34 TTAATCT 25 3.889193E-5 45.0 15 ACGTTCA 20 7.0313405E-4 45.0 17 GTTTACG 55 1.8189894E-12 45.0 1 CGATTCC 20 7.0313405E-4 45.0 22 CACGACC 25 3.889193E-5 45.0 37 GACCCTC 45 3.8380676E-10 45.0 9 TAGCCCG 25 3.889193E-5 45.0 1 GTTACGA 25 3.889193E-5 45.0 2 >>END_MODULE