SRR1546930_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546930_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1108954
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3070	0.27683745222975886	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1812	0.16339721936166873	No Hit
AAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1598	0.14409975526487123	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1241	0.11190725674825104	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTC	25	3.8907157E-5	45.000004	45
CTATACG	25	3.8907157E-5	45.000004	1
AAACGCG	25	3.8907157E-5	45.000004	1
CGCTAAC	25	3.8907157E-5	45.000004	14
AACGATC	25	3.8907157E-5	45.000004	42
TCGTAAG	30	2.1654323E-6	45.000004	1
ATACGTT	25	3.8907157E-5	45.000004	10
GTGCGTT	25	3.8907157E-5	45.000004	44
GGTACGA	35	1.2118835E-7	45.0	2
CGACGGC	20	7.0331804E-4	45.0	15
TTCACGT	20	7.0331804E-4	45.0	26
TTCACGA	35	1.2118835E-7	45.0	2
ATTCGCG	20	7.0331804E-4	45.0	1
TTTCACG	20	7.0331804E-4	45.0	25
CATACGC	20	7.0331804E-4	45.0	32
TCGTAAA	20	7.0331804E-4	45.0	38
ACGTCGA	20	7.0331804E-4	45.0	2
GTTCACG	45	3.8562575E-10	45.0	1
ATCGGCA	20	7.0331804E-4	45.0	14
TCGACAC	35	1.2118835E-7	45.0	34