SRR1546929_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546929_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	858899
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3334	0.38817136822839476	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1710	0.19909209348247	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	861	0.1002446154902963	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAG	20	7.0322887E-4	45.000004	1
TCGGTAT	20	7.0322887E-4	45.000004	22
TAGTACG	70	0.0	45.000004	1
GTAGCGC	25	3.8899794E-5	45.0	34
ACGGTCT	135	0.0	45.0	30
CGGTCTA	145	0.0	43.44828	31
CGTTTTT	3185	0.0	42.31554	1
TTAACGA	80	0.0	42.187504	2
TTTAGCG	70	0.0	41.785717	1
TTAGCGA	105	0.0	40.714287	2
CACGACG	150	0.0	40.500004	26
CTTGCGA	50	1.0804797E-9	40.5	2
TTCGCAT	50	1.0804797E-9	40.5	25
AGGGGAA	7260	0.0	40.227272	8
ACGGGCG	45	1.9274012E-8	40.0	5
CGAGGTA	45	1.9274012E-8	40.0	6
AGTACGA	90	0.0	40.0	2
GAGGGGA	7320	0.0	39.989754	7
GAGCGAT	565	0.0	39.42478	7
CGAATGA	80	0.0	39.375004	2