##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546929_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 858899 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.71742544816096 31.0 31.0 34.0 30.0 34.0 2 32.06252772444723 33.0 31.0 34.0 30.0 34.0 3 32.10023297267781 33.0 31.0 34.0 30.0 34.0 4 35.84451256783394 37.0 35.0 37.0 35.0 37.0 5 35.82791690291874 37.0 35.0 37.0 35.0 37.0 6 35.8758713189793 37.0 35.0 37.0 35.0 37.0 7 36.10141937526997 37.0 35.0 37.0 35.0 37.0 8 13.282605987432747 0.0 0.0 35.0 0.0 37.0 9 24.953785020124602 18.0 17.0 39.0 17.0 39.0 10 32.64851396962856 32.0 32.0 37.0 27.0 39.0 11 35.541547958491044 37.0 35.0 37.0 32.0 39.0 12 36.566557883988686 37.0 35.0 39.0 33.0 39.0 13 36.75602602867159 39.0 35.0 39.0 33.0 39.0 14 37.935518611617894 40.0 37.0 41.0 33.0 41.0 15 38.24553643676381 40.0 37.0 41.0 33.0 41.0 16 38.34390772372537 40.0 37.0 41.0 34.0 41.0 17 38.32613846331175 40.0 37.0 41.0 34.0 41.0 18 38.26242084342862 40.0 37.0 41.0 34.0 41.0 19 38.2516081634744 40.0 37.0 41.0 34.0 41.0 20 38.22015277698542 40.0 37.0 41.0 34.0 41.0 21 38.14489596564905 40.0 37.0 41.0 34.0 41.0 22 38.09117952168998 40.0 36.0 41.0 33.0 41.0 23 37.991812774261 40.0 36.0 41.0 33.0 41.0 24 37.904313545597326 40.0 36.0 41.0 33.0 41.0 25 37.79633460977367 40.0 35.0 41.0 33.0 41.0 26 37.72681421214834 40.0 35.0 41.0 33.0 41.0 27 37.67345753109504 40.0 35.0 41.0 33.0 41.0 28 37.60515730021807 40.0 36.0 41.0 33.0 41.0 29 37.61748820292025 40.0 36.0 41.0 33.0 41.0 30 37.52921822007011 40.0 36.0 41.0 33.0 41.0 31 37.46646578934194 40.0 35.0 41.0 33.0 41.0 32 37.322005264879806 40.0 35.0 41.0 33.0 41.0 33 37.18989660018233 40.0 35.0 41.0 32.0 41.0 34 37.025075125247554 40.0 35.0 41.0 31.0 41.0 35 36.896517518357804 40.0 35.0 41.0 31.0 41.0 36 36.79376504105838 40.0 35.0 41.0 31.0 41.0 37 36.72091596334377 40.0 35.0 41.0 31.0 41.0 38 36.63959673954679 40.0 35.0 41.0 31.0 41.0 39 36.56389167992977 39.0 35.0 41.0 30.0 41.0 40 36.4500808593327 39.0 35.0 41.0 30.0 41.0 41 36.39847525727705 39.0 35.0 41.0 30.0 41.0 42 36.345672774098006 39.0 35.0 41.0 30.0 41.0 43 36.24324396698564 39.0 35.0 41.0 30.0 41.0 44 36.077266360771176 39.0 35.0 40.0 29.0 41.0 45 35.987084628111106 39.0 35.0 40.0 29.0 41.0 46 35.94669687588413 38.0 35.0 40.0 29.0 41.0 47 35.91050519327651 38.0 35.0 40.0 29.0 41.0 48 35.834293671316416 38.0 35.0 40.0 29.0 41.0 49 35.74918005493079 38.0 35.0 40.0 29.0 41.0 50 35.62923580071696 38.0 35.0 40.0 28.0 41.0 51 35.26049512224371 38.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 4.0 14 8.0 15 15.0 16 37.0 17 84.0 18 227.0 19 454.0 20 837.0 21 1512.0 22 2364.0 23 3631.0 24 5349.0 25 7934.0 26 9963.0 27 11400.0 28 11928.0 29 13730.0 30 16438.0 31 21066.0 32 28252.0 33 39076.0 34 60714.0 35 91609.0 36 92256.0 37 156551.0 38 201318.0 39 82126.0 40 15.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.37633644933805 22.250695366975627 28.005504721742604 14.367463461943721 2 32.80816487153903 24.943328610232403 29.367830210536976 12.88067630769159 3 30.165362865715295 24.847042550986785 31.49543776392801 13.492156819369914 4 27.020639213691016 26.14207258362159 31.62118013875904 15.216108063928354 5 23.85134922732475 31.428840876517494 29.78883430997125 14.930975586186502 6 21.948331526756927 40.99876702615791 27.150922285390948 9.901979161694216 7 85.98624518133097 4.3639589753859305 7.59111373979944 2.0586821034836458 8 32.54282517502058 63.70632635501963 2.7259316869620296 1.0249167829977681 9 82.89065419799068 5.039591383853049 8.608113410307848 3.46164100784842 10 47.34875695512511 24.99933053828215 15.28282137946371 12.369091127129034 11 40.89863883879246 22.555737054065727 21.527676711697186 15.017947395444633 12 36.452248751017294 22.41474259488019 25.30437222537225 15.82863642873027 13 23.49088775280912 32.2554805629067 26.610695786116878 17.642935898167305 14 18.473301284551503 35.1786414933537 28.79581883318062 17.55223838891418 15 17.339524204825015 24.573669313854133 41.13976148534345 16.947044995977407 16 20.328816310183154 21.56586513664587 39.74867824971272 18.356640303458267 17 21.13694392472223 21.35594522755295 28.234518843309864 29.272592004414953 18 23.891167646021245 24.17536869876435 31.50545058266455 20.42801307254986 19 28.00969613423697 25.57949188437756 26.10202130867541 20.30879067271006 20 30.525475055856393 24.83865972599805 25.136366441223007 19.49949877692255 21 25.75506549664163 25.919345580795877 28.54747764288933 19.778111279673162 22 24.110751089476178 22.928772766064462 28.52593843979327 24.43453770466609 23 22.18782417956011 27.52814940988405 27.27107611022949 23.01295030032635 24 23.0796636158617 24.459569751507455 33.20716405537787 19.25360257725297 25 20.790453825187825 24.75005792299211 32.233359219186426 22.22612903263364 26 19.89279298264406 31.094692158216507 27.18841214159057 21.82410271754886 27 20.43197162879454 29.328244648090173 30.087705306444647 20.152078416670644 28 18.355708878459517 27.191672129086193 35.72899723948916 18.723621752965133 29 19.771707732806767 25.59567539373081 34.062212204228906 20.57040466923352 30 21.347562402564215 26.542468904958554 32.32720028781033 19.782768404666907 31 27.868352390676904 24.940185050861626 26.42126722699642 20.77019533146505 32 28.40846246182613 26.386920930167573 26.789063673377196 18.4155529346291 33 26.628858573592474 25.934015524526167 26.827019242076194 20.61010665980517 34 21.758087970762567 27.318113072666282 28.59055604908144 22.333242907489705 35 21.369916602534175 26.76950374840348 29.36398808241714 22.496591566645204 36 27.794420531401247 25.969060390104076 26.530243951849986 19.706275126644694 37 22.241963257612362 30.081767472077626 27.553880025474477 20.12238924483554 38 21.959625054866756 31.363873982854795 24.28364685486885 22.3928541074096 39 22.02214695790774 28.479600046105535 27.106213885451027 22.3920391105357 40 23.71221761813671 25.789062509095945 27.04369198241004 23.455027890357304 41 20.13414848544474 25.05277104758534 28.288425065112428 26.524655401857494 42 22.811063931847634 26.16826891171139 25.623036003069043 25.397631153371936 43 22.81746747871403 26.257336427216703 25.72619132168043 25.19900477238884 44 21.03518574360897 28.367596190006044 28.652728667747894 21.944489398637092 45 21.24475636832736 31.55283682947588 25.232303216094092 21.970103586102674 46 22.83225385056916 29.780335056857677 26.931105985686326 20.45630510688684 47 22.723626410090127 27.657501056585232 26.74994382342976 22.868928709894874 48 23.10679136895025 25.453865937671367 29.26467489192559 22.17466780145279 49 22.137876514002226 24.85437752285193 30.181779231318234 22.825966731827606 50 20.713261978416554 29.281440541903063 28.137301359065503 21.86799612061488 51 20.304599260215696 30.903750033473088 26.367943145818078 22.423707560493142 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 580.0 1 1101.0 2 1622.0 3 5395.5 4 9169.0 5 6519.5 6 3870.0 7 3935.0 8 4000.0 9 4138.5 10 4277.0 11 4085.5 12 3894.0 13 3754.0 14 3614.0 15 3546.5 16 3479.0 17 3298.5 18 3118.0 19 3168.5 20 3219.0 21 3152.5 22 3086.0 23 3667.0 24 4248.0 25 5015.5 26 6850.5 27 7918.0 28 9565.5 29 11213.0 30 12462.0 31 13711.0 32 15612.5 33 17514.0 34 20177.5 35 22841.0 36 26561.0 37 30281.0 38 37742.5 39 45204.0 40 52939.0 41 60674.0 42 65025.0 43 69376.0 44 68713.0 45 68050.0 46 68906.0 47 69762.0 48 68086.0 49 66410.0 50 62465.5 51 58521.0 52 53971.5 53 49422.0 54 47198.0 55 44974.0 56 43011.5 57 41049.0 58 38737.0 59 36425.0 60 32994.5 61 29564.0 62 25833.0 63 22102.0 64 18562.0 65 15022.0 66 12033.5 67 9045.0 68 7497.0 69 5949.0 70 5127.0 71 4305.0 72 3514.0 73 2723.0 74 2114.5 75 1128.0 76 750.0 77 568.5 78 387.0 79 267.5 80 148.0 81 97.0 82 46.0 83 33.0 84 20.0 85 15.5 86 11.0 87 10.0 88 9.0 89 6.5 90 4.0 91 3.0 92 2.0 93 2.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 858899.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.054874732213403 #Duplication Level Percentage of deduplicated Percentage of total 1 70.97668407689204 18.492886125313078 2 5.7513217309034 2.996999344866897 3 2.813131067154416 2.198873326800183 4 2.0796409460490226 2.167391373491562 5 1.674488280563494 2.1814291195320625 6 1.4415777213619327 2.253607616810088 7 1.3416887073196802 2.447027183918772 8 1.2032575161219077 2.508057908252044 9 1.081877501617685 2.5369364502223903 >10 11.449767282980392 57.68499726254608 >50 0.15824322782320022 2.5351810737919322 >100 0.02652372272316131 1.246272709245596 >500 8.991092448529257E-4 0.15953227725493438 >1k 8.991092448529257E-4 0.5908082279543972 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3334 0.38817136822839476 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1710 0.19909209348247 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 861 0.1002446154902963 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.009081393737796878 0.0 2 0.0 0.0 0.0 0.029107031210887428 0.0 3 0.0 0.0 0.0 0.04296197806726984 0.0 4 0.0 0.0 0.0 0.06624760303597978 0.0 5 0.0 0.0 0.0 0.13121449669868052 0.0 6 0.0 0.0 0.0 0.18919570287076828 0.0 7 0.0 0.0 0.0 0.22738412781945258 0.0 8 0.0 0.0 0.0 0.3098152402086858 0.0 9 0.0 0.0 0.0 0.39236278072276254 0.0 10 0.0 0.0 0.0 0.5713128086072984 0.0 11 0.0 0.0 0.0 0.7345450396379551 0.0 12 0.0 0.0 0.0 0.8903258706786246 0.0 13 0.0 0.0 0.0 0.9513342080966447 0.0 14 0.0 0.0 0.0 0.9754348299392595 0.0 15 0.0 0.0 0.0 1.0181639517568422 0.0 16 0.0 0.0 0.0 1.1008279203957625 0.0 17 0.0 0.0 0.0 1.193271851521541 0.0 18 0.0 0.0 0.0 1.3178499451041392 0.0 19 0.0 0.0 0.0 1.3851454012637108 0.0 20 0.0 0.0 0.0 1.4543037074207794 0.0 21 0.0 0.0 0.0 1.5559454604091982 0.0 22 0.0 0.0 0.0 1.6543272259019979 0.0 23 0.0 0.0 0.0 1.7699403538716427 0.0 24 0.0 0.0 0.0 1.8547000287577469 0.0 25 0.0 0.0 0.0 1.92991259740668 0.0 26 0.0 0.0 0.0 2.0060565910543615 0.0 27 0.0 0.0 0.0 2.0818513003275125 0.0 28 0.0 1.1642812484354971E-4 0.0 2.1674259720875213 0.0 29 0.0 1.1642812484354971E-4 0.0 2.2566099157176804 0.0 30 0.0 1.1642812484354971E-4 0.0 2.367216634319053 0.0 31 0.0 1.1642812484354971E-4 0.0 2.4730497998018395 0.0 32 0.0 1.1642812484354971E-4 0.0 2.5686372902983936 0.0 33 0.0 1.1642812484354971E-4 0.0 2.6677176245402543 0.0 34 0.0 1.1642812484354971E-4 0.0 2.7732015056485104 0.0 35 0.0 1.1642812484354971E-4 0.0 2.8994095929789183 0.0 36 0.0 1.1642812484354971E-4 0.0 3.002914195964834 0.0 37 0.0 1.1642812484354971E-4 0.0 3.1178287551854176 0.0 38 0.0 1.1642812484354971E-4 0.0 3.23565401752709 0.0 39 0.0 1.1642812484354971E-4 0.0 3.392133417316821 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTAG 20 7.0322887E-4 45.000004 1 TCGGTAT 20 7.0322887E-4 45.000004 22 TAGTACG 70 0.0 45.000004 1 GTAGCGC 25 3.8899794E-5 45.0 34 ACGGTCT 135 0.0 45.0 30 CGGTCTA 145 0.0 43.44828 31 CGTTTTT 3185 0.0 42.31554 1 TTAACGA 80 0.0 42.187504 2 TTTAGCG 70 0.0 41.785717 1 TTAGCGA 105 0.0 40.714287 2 CACGACG 150 0.0 40.500004 26 CTTGCGA 50 1.0804797E-9 40.5 2 TTCGCAT 50 1.0804797E-9 40.5 25 AGGGGAA 7260 0.0 40.227272 8 ACGGGCG 45 1.9274012E-8 40.0 5 CGAGGTA 45 1.9274012E-8 40.0 6 AGTACGA 90 0.0 40.0 2 GAGGGGA 7320 0.0 39.989754 7 GAGCGAT 565 0.0 39.42478 7 CGAATGA 80 0.0 39.375004 2 >>END_MODULE