SRR1546928_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546928_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	909746
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2824	0.3104163140041286	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1549	0.17026730537974336	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	954	0.10486443468836355	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATGA	30	2.1650012E-6	45.000004	2
TAGCGTG	30	2.1650012E-6	45.000004	1
TCTAGCG	30	2.1650012E-6	45.000004	1
GACGATT	30	2.1650012E-6	45.000004	7
CACGTCA	35	1.2115561E-7	45.000004	34
GTCGCCC	20	7.0325093E-4	45.0	16
CGAACTG	20	7.0325093E-4	45.0	12
ACGCATG	20	7.0325093E-4	45.0	1
AAACGCC	20	7.0325093E-4	45.0	44
CTAACGT	20	7.0325093E-4	45.0	31
TATTCGG	25	3.8901628E-5	45.0	34
TCGTATA	20	7.0325093E-4	45.0	15
ACGCTAA	25	3.8901628E-5	45.0	39
CTACCGA	20	7.0325093E-4	45.0	2
CGGTCTA	80	0.0	45.0	31
CCGGTAC	20	7.0325093E-4	45.0	20
AATAGAC	25	3.8901628E-5	45.0	27
ACGACTA	20	7.0325093E-4	45.0	21
TACGTAG	65	0.0	44.999996	1
CGTAAGA	100	0.0	42.75	2