SRR1546927_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546927_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1077085
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9941	0.9229540844037378	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5584	0.5184363351081855	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATCGG	20	7.03309E-4	45.0	1
CTATACG	35	1.211829E-7	45.0	1
CGCATCG	35	1.211829E-7	45.0	21
CGCGTAG	20	7.03309E-4	45.0	1
TCGAACA	20	7.03309E-4	45.0	41
TAGTACG	40	6.8139343E-9	45.0	1
TATAGCG	30	2.165374E-6	44.999996	1
CGTTTTT	8270	0.0	43.93894	1
GCGTAAG	90	0.0	42.5	1
TCACGAC	245	0.0	42.2449	25
TACGCGA	65	0.0	41.53846	2
TTACGAG	120	0.0	41.249996	3
CGTAAGA	105	0.0	40.714287	2
ACGACGG	250	0.0	40.500004	27
GTTTTTA	5930	0.0	40.408936	2
TAACGGG	90	0.0	40.0	3
TGGTTCG	45	1.9281288E-8	40.0	37
TATACGA	45	1.9281288E-8	40.0	2
ACGTAGA	85	0.0	39.705883	2
CGGTCTA	250	0.0	39.600002	31