##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546927_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1077085 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.731315541484655 31.0 31.0 34.0 30.0 34.0 2 32.091701212067754 33.0 31.0 34.0 30.0 34.0 3 32.05901391255101 33.0 31.0 34.0 30.0 34.0 4 35.83557008035577 37.0 35.0 37.0 35.0 37.0 5 35.83942400089129 37.0 35.0 37.0 35.0 37.0 6 35.890492393822214 37.0 35.0 37.0 35.0 37.0 7 36.109566097383215 37.0 35.0 37.0 35.0 37.0 8 13.249518840202954 0.0 0.0 36.0 0.0 37.0 9 24.926331719409333 18.0 17.0 39.0 17.0 39.0 10 32.6608150703055 32.0 32.0 38.0 27.0 39.0 11 35.56806751556284 37.0 35.0 37.0 32.0 39.0 12 36.66418342099277 37.0 35.0 39.0 33.0 39.0 13 36.90555527186805 39.0 37.0 39.0 33.0 39.0 14 38.120332192909565 40.0 37.0 41.0 33.0 41.0 15 38.40186800484641 40.0 38.0 41.0 34.0 41.0 16 38.47735044123723 40.0 38.0 41.0 34.0 41.0 17 38.455573144180825 40.0 38.0 41.0 34.0 41.0 18 38.369128713147056 40.0 37.0 41.0 34.0 41.0 19 38.32816165855063 40.0 37.0 41.0 34.0 41.0 20 38.273578222702945 40.0 37.0 41.0 34.0 41.0 21 38.202460344355366 40.0 37.0 41.0 34.0 41.0 22 38.14243536953908 40.0 37.0 41.0 34.0 41.0 23 38.00250769437881 40.0 36.0 41.0 34.0 41.0 24 37.81007998440234 40.0 35.0 41.0 33.0 41.0 25 37.6872410255458 40.0 35.0 41.0 33.0 41.0 26 37.614928255430165 40.0 35.0 41.0 33.0 41.0 27 37.55708695228324 40.0 35.0 41.0 33.0 41.0 28 37.4720955170669 40.0 35.0 41.0 33.0 41.0 29 37.445321399889515 40.0 35.0 41.0 33.0 41.0 30 37.31677815585585 40.0 35.0 41.0 33.0 41.0 31 37.19825361972361 40.0 35.0 41.0 32.0 41.0 32 36.96743618191693 40.0 35.0 41.0 31.0 41.0 33 36.70836006443317 40.0 35.0 41.0 31.0 41.0 34 36.41494960936231 40.0 35.0 41.0 30.0 41.0 35 36.19614050887349 40.0 35.0 41.0 29.0 41.0 36 36.04757099021897 39.0 35.0 41.0 28.0 41.0 37 35.968724845300045 39.0 35.0 41.0 27.0 41.0 38 35.86980971789599 39.0 35.0 41.0 27.0 41.0 39 35.78458896001708 39.0 35.0 41.0 27.0 41.0 40 35.666990998853386 39.0 35.0 41.0 26.0 41.0 41 35.60855271403835 39.0 35.0 41.0 26.0 41.0 42 35.538314060635884 39.0 35.0 41.0 25.0 41.0 43 35.4483471592307 39.0 35.0 41.0 25.0 41.0 44 35.263269844069875 38.0 35.0 40.0 24.0 41.0 45 35.17717821713235 38.0 35.0 40.0 24.0 41.0 46 35.14909036891239 38.0 35.0 40.0 24.0 41.0 47 35.11639564194098 38.0 35.0 40.0 24.0 41.0 48 35.01999656480222 38.0 34.0 40.0 23.0 41.0 49 34.93090610304665 38.0 34.0 40.0 24.0 41.0 50 34.810444858112405 38.0 34.0 40.0 24.0 41.0 51 34.44954205099876 37.0 34.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 7.0 14 22.0 15 27.0 16 53.0 17 146.0 18 360.0 19 772.0 20 1427.0 21 2362.0 22 3761.0 23 6100.0 24 9633.0 25 14542.0 26 18961.0 27 19887.0 28 18910.0 29 19338.0 30 21634.0 31 27133.0 32 34707.0 33 47623.0 34 72298.0 35 109288.0 36 113026.0 37 190481.0 38 241660.0 39 102902.0 40 23.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.39419358732133 22.314951930441886 27.623910833406836 17.666943648829943 2 35.86151510790699 23.598508938477465 27.743028637479867 12.796947316135682 3 28.567847477218606 23.75578529085448 34.738483963661174 12.937883268265734 4 25.878273302478448 26.167294131846603 33.44239312589071 14.512039439784234 5 22.736645668633397 30.22741937730077 32.57774456055 14.458190393515832 6 20.962969496372153 38.63789765895913 30.366034249850287 10.033098594818423 7 81.95787704777247 4.473834469888635 11.524160117353784 2.044128364985122 8 30.875650482552448 63.803599530213496 4.193726586109731 1.127023401124331 9 77.8925525840579 5.700292920243063 12.94224689787714 3.464907597821899 10 43.217387671353706 25.277392220669675 19.612936769150068 11.892283338826555 11 36.20995557453683 22.62458394648519 25.907054689277075 15.258405789700905 12 31.85198939730848 21.963076266032857 30.191489065394094 15.99344527126457 13 22.635725128471755 29.516704809741107 30.968586508957046 16.878983552830093 14 17.889024543095484 32.281946178806685 33.02283478091329 16.80619449718453 15 17.33827878022626 24.50038762028995 42.064461022110606 16.09687257737319 16 20.66800670327783 21.715370653198214 40.15616223417836 17.460460409345597 17 20.73615359976232 21.614542956219797 31.46483332327532 26.18447012074256 18 22.755585678010558 23.961804314422725 33.920999735396926 19.36161027216979 19 26.167479818213046 25.199775319496602 29.911009808882305 18.721735053408043 20 27.25513770965151 24.758213140095723 29.217378387035374 18.76927076321739 21 24.411536693947088 25.380819526778296 32.09690971464648 18.11073406462814 22 22.843972388437308 22.873125147968825 31.839269881207148 22.44363258238672 23 21.224880116239667 25.847913581565056 30.747712576073383 22.179493726121894 24 21.21308903197055 24.3933394300357 35.56460260796502 18.828968930028736 25 20.529856046644415 24.672518881982388 34.093966585738364 20.703658485634836 26 19.463273557797205 29.409099560387524 30.687085977429824 20.440540904385447 27 19.75656517359354 28.16500090522104 32.43773704025216 19.64069688093326 28 18.316381715463496 26.345831573181318 36.6896763022417 18.648110409113485 29 19.40589647056639 25.061624662863192 35.773592613396346 19.758886253174076 30 20.648509634801336 26.219193471267353 33.74552611910852 19.386770774822786 31 26.25317407632638 24.594901980809315 29.6751881235 19.4767358193643 32 25.861282999948937 26.115859008341957 29.672031455270474 18.35082653643863 33 25.13348528667654 26.128299994893624 29.02287191818659 19.71534280024325 34 20.611279518329564 27.57061884623776 30.477538912899167 21.340562722533505 35 20.993422060468767 27.058588690771852 30.71995246429019 21.228036784469193 36 25.981607765403847 26.507750084719405 28.70284146562249 18.80780068425426 37 22.00383442346704 29.451714581486137 29.086655185059673 19.45779580998714 38 21.583626176207076 30.637693403956046 26.631138675220615 21.147541744616255 39 21.65632238866942 29.195374552611913 28.097503911019096 21.05079914769958 40 22.490518389913518 26.578310903967655 28.475282823546888 22.455887882571943 41 20.305546915981562 25.94177803980187 29.186554450205882 24.566120594010687 42 22.315601832724436 26.88896419502639 27.42829024635939 23.367143725889786 43 22.085443581518636 26.84040721020161 27.490216649568044 23.58393255871171 44 20.831596392113898 28.690307635887603 29.04218330029663 21.435912671701864 45 20.60895843874903 30.93989796534164 27.03194269718732 21.419200898722014 46 21.8785889693014 29.218771034783696 28.972365226514157 19.930274769400743 47 21.962983422849636 27.312607640065544 28.907560684625633 21.816848252459184 48 22.057126410636116 26.39986630581616 30.65041292005738 20.892594363490346 49 22.060375922048863 25.39233208149775 30.53343050919844 22.013861487254953 50 20.505159759907528 28.87033056815386 29.67221714163692 20.952292530301694 51 20.262281992600396 29.801269166314636 28.323577062163153 21.612871778921814 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 958.0 1 1540.0 2 2122.0 3 13733.5 4 25345.0 5 17431.0 6 9517.0 7 9392.5 8 9268.0 9 9272.5 10 9277.0 11 9106.5 12 8936.0 13 8550.5 14 8165.0 15 7716.5 16 7268.0 17 7020.0 18 6772.0 19 6511.0 20 6250.0 21 6435.5 22 6621.0 23 7245.0 24 7869.0 25 8600.0 26 10512.0 27 11693.0 28 13800.5 29 15908.0 30 18502.0 31 21096.0 32 23822.0 33 26548.0 34 28714.0 35 30880.0 36 34176.5 37 37473.0 38 45917.0 39 54361.0 40 62093.5 41 69826.0 42 75169.5 43 80513.0 44 79844.0 45 79175.0 46 78932.5 47 78690.0 48 77203.5 49 75717.0 50 71436.0 51 67155.0 52 62548.5 53 57942.0 54 54696.5 55 51451.0 56 49172.0 57 46893.0 58 43923.0 59 40953.0 60 37621.0 61 34289.0 62 30111.5 63 25934.0 64 22091.0 65 18248.0 66 15361.0 67 12474.0 68 10384.0 69 8294.0 70 7327.0 71 6360.0 72 5169.5 73 3979.0 74 2915.5 75 1340.0 76 828.0 77 629.0 78 430.0 79 329.5 80 229.0 81 171.0 82 113.0 83 74.0 84 35.0 85 24.0 86 13.0 87 14.5 88 16.0 89 11.0 90 6.0 91 4.5 92 3.0 93 4.0 94 5.0 95 4.0 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1077085.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.312928344759854 #Duplication Level Percentage of deduplicated Percentage of total 1 72.27371430941307 21.90827923070883 2 6.559957587448255 3.9770304858596535 3 3.2687757035459697 2.9725849103004283 4 2.2857989277074537 2.771570364244998 5 1.783338471954235 2.702910565740113 6 1.472312978025118 2.677807068236124 7 1.2353406846304358 2.621275555819828 8 1.0883436782513312 2.639270714664398 9 0.990880008277188 2.7032827220245306 >10 8.89333993188393 50.064268112722274 >50 0.12452336913448436 2.305897263550584 >100 0.02244451337940107 1.0649947183921726 >500 3.074590872817074E-4 0.049582321698727325 >1k 3.074590872817074E-4 0.0943182510509625 >5k 6.149181745634148E-4 1.4469277149863564 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9941 0.9229540844037378 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5584 0.5184363351081855 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.007891670573817294 0.0 2 0.0 0.0 0.0 0.02321079580534498 0.0 3 0.0 0.0 0.0 0.037044430105330595 0.0 4 0.0 0.0 0.0 0.05802698951336246 0.0 5 0.0 0.0 0.0 0.11475417446162559 0.0 6 0.0 0.0 0.0 0.20202676668972272 0.0 7 0.0 0.0 0.0 0.252440615178932 0.0 8 0.0 0.0 0.0 0.3409201687889071 0.0 9 0.0 0.0 0.0 0.47294317532970936 0.0 10 0.0 0.0 0.0 0.6511092439315375 0.0 11 0.0 0.0 0.0 0.838931003588389 0.0 12 0.0 0.0 0.0 0.9781029352372376 0.0 13 0.0 0.0 0.0 1.04151482937744 0.0 14 0.0 0.0 0.0 1.0702962161760678 0.0 15 0.0 0.0 0.0 1.1037197621357646 0.0 16 0.0 0.0 0.0 1.172238031353143 0.0 17 0.0 0.0 0.0 1.2531972871221864 0.0 18 0.0 0.0 0.0 1.3672087161180408 0.0 19 0.0 0.0 0.0 1.429785021609251 0.0 20 0.0 0.0 0.0 1.4973748589944156 0.0 21 0.0 0.0 0.0 1.5805623511607718 0.0 22 0.0 0.0 0.0 1.670991611618396 0.0 23 0.0 0.0 0.0 1.7724692108793643 0.0 24 0.0 0.0 0.0 1.8536141530148502 0.0 25 0.0 0.0 0.0 1.9283529155080612 0.0 26 0.0 0.0 0.0 1.9973354006415465 0.0 27 9.284318322137993E-5 0.0 0.0 2.0689174949052305 0.0 28 9.284318322137993E-5 0.0 0.0 2.149691064307831 0.0 29 9.284318322137993E-5 0.0 0.0 2.2378920883681417 0.0 30 9.284318322137993E-5 0.0 0.0 2.3404838058277666 0.0 31 9.284318322137993E-5 0.0 0.0 2.4428898369209486 0.0 32 9.284318322137993E-5 0.0 0.0 2.5349902746765576 0.0 33 9.284318322137993E-5 0.0 0.0 2.6336825784408844 0.0 34 9.284318322137993E-5 0.0 0.0 2.738131159564937 0.0 35 9.284318322137993E-5 0.0 0.0 2.8546493545077687 0.0 36 9.284318322137993E-5 0.0 0.0 2.9618832311284624 0.0 37 9.284318322137993E-5 0.0 0.0 3.0696741668484844 0.0 38 9.284318322137993E-5 0.0 0.0 3.1918557959678204 0.0 39 9.284318322137993E-5 0.0 0.0 3.341519007320685 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATCGG 20 7.03309E-4 45.0 1 CTATACG 35 1.211829E-7 45.0 1 CGCATCG 35 1.211829E-7 45.0 21 CGCGTAG 20 7.03309E-4 45.0 1 TCGAACA 20 7.03309E-4 45.0 41 TAGTACG 40 6.8139343E-9 45.0 1 TATAGCG 30 2.165374E-6 44.999996 1 CGTTTTT 8270 0.0 43.93894 1 GCGTAAG 90 0.0 42.5 1 TCACGAC 245 0.0 42.2449 25 TACGCGA 65 0.0 41.53846 2 TTACGAG 120 0.0 41.249996 3 CGTAAGA 105 0.0 40.714287 2 ACGACGG 250 0.0 40.500004 27 GTTTTTA 5930 0.0 40.408936 2 TAACGGG 90 0.0 40.0 3 TGGTTCG 45 1.9281288E-8 40.0 37 TATACGA 45 1.9281288E-8 40.0 2 ACGTAGA 85 0.0 39.705883 2 CGGTCTA 250 0.0 39.600002 31 >>END_MODULE