SRR1546926_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546926_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	972573
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3305	0.3398202499966584	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1830	0.1881606830541255	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1317	0.13541399977173948	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAC	35	1.2116652E-7	45.000004	6
GTGTCGA	35	1.2116652E-7	45.000004	2
CCTTACG	20	7.032752E-4	45.0	39
ACACGTA	20	7.032752E-4	45.0	10
ACCGGCA	20	7.032752E-4	45.0	31
CGAACAG	25	3.8903614E-5	45.0	16
ACCGCGA	20	7.032752E-4	45.0	2
TCGATAC	45	3.8380676E-10	45.0	31
TCTAGCG	20	7.032752E-4	45.0	1
CCGTCTA	25	3.8903614E-5	45.0	16
ATCCGAT	20	7.032752E-4	45.0	41
GCGTAAG	55	1.8189894E-12	45.0	1
CACGATA	30	2.1651558E-6	44.999996	35
TTCGCGA	65	0.0	44.999996	2
CGACGGT	185	0.0	43.783783	28
TCACGAC	180	0.0	43.75	25
AACGCCG	120	0.0	43.124996	13
ATTGCGA	120	0.0	43.124996	2
CGTAAGA	105	0.0	42.857143	2
CGTTTTT	3025	0.0	42.842976	1