SRR1546925_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546925_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	813568
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2218	0.272626258653241	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1202	0.1477442573945878	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1101	0.1353298064820642	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGCAA	30	2.1647156E-6	45.000004	32
ATTACGA	30	2.1647156E-6	45.000004	2
TTCGTCG	20	7.032069E-4	45.000004	1
CGCGAGT	70	0.0	45.000004	4
TAGCCGT	20	7.032069E-4	45.000004	44
ATATACG	20	7.032069E-4	45.000004	1
TCTAACG	20	7.032069E-4	45.000004	1
GCGATAC	35	1.2113378E-7	45.000004	9
CGCACCG	20	7.032069E-4	45.000004	44
GCGTAAG	35	1.2113378E-7	45.000004	1
TCGCGGA	30	2.1647156E-6	45.000004	2
ATCGATC	20	7.032069E-4	45.000004	38
AATCGCG	20	7.032069E-4	45.000004	1
TAGTACG	40	6.8102963E-9	45.000004	1
CGACGGT	200	0.0	45.0	28
TAACGCC	85	0.0	45.0	12
CGTTAGA	55	1.8189894E-12	45.0	2
CTACGCG	25	3.8897968E-5	45.0	1
TATCGTG	50	2.1827873E-11	45.0	1
CACGACG	205	0.0	43.90244	26