##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546925_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 813568 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.69829073906545 31.0 31.0 33.0 30.0 34.0 2 32.066117398914415 33.0 31.0 34.0 30.0 34.0 3 32.10627261642542 33.0 31.0 34.0 30.0 34.0 4 35.855295439348644 37.0 35.0 37.0 35.0 37.0 5 35.83481036618943 37.0 35.0 37.0 35.0 37.0 6 35.87043246538703 37.0 35.0 37.0 35.0 37.0 7 36.11125191747955 37.0 35.0 37.0 35.0 37.0 8 13.265561084015104 0.0 0.0 36.0 0.0 37.0 9 25.00333223528949 18.0 17.0 39.0 17.0 39.0 10 32.47724713853052 32.0 32.0 37.0 27.0 39.0 11 35.466383879405285 37.0 34.0 37.0 32.0 39.0 12 36.50488588538389 37.0 35.0 39.0 33.0 39.0 13 36.66743160989616 39.0 35.0 39.0 33.0 39.0 14 37.826533246145374 40.0 36.0 41.0 33.0 41.0 15 38.174477118077405 40.0 37.0 41.0 33.0 41.0 16 38.30310926683449 40.0 37.0 41.0 34.0 41.0 17 38.30048010737885 40.0 37.0 41.0 34.0 41.0 18 38.23565577800503 40.0 37.0 41.0 34.0 41.0 19 38.225949152375705 40.0 37.0 41.0 34.0 41.0 20 38.195060523521086 40.0 36.0 41.0 34.0 41.0 21 38.11233111430145 40.0 36.0 41.0 34.0 41.0 22 38.061294200361864 40.0 36.0 41.0 33.0 41.0 23 37.98969477658905 40.0 36.0 41.0 34.0 41.0 24 37.91148373584015 40.0 36.0 41.0 34.0 41.0 25 37.80559707363121 40.0 35.0 41.0 33.0 41.0 26 37.73313109660164 40.0 35.0 41.0 33.0 41.0 27 37.67612172553493 40.0 35.0 41.0 33.0 41.0 28 37.65068808016048 40.0 35.0 41.0 33.0 41.0 29 37.68737216803021 40.0 36.0 41.0 33.0 41.0 30 37.60785453705161 40.0 36.0 41.0 33.0 41.0 31 37.53687583582442 40.0 35.0 41.0 33.0 41.0 32 37.393132473253615 40.0 35.0 41.0 33.0 41.0 33 37.26984714246382 40.0 35.0 41.0 32.0 41.0 34 37.13228396397105 40.0 35.0 41.0 32.0 41.0 35 37.01124921334173 40.0 35.0 41.0 32.0 41.0 36 36.91642001651982 40.0 35.0 41.0 31.0 41.0 37 36.84887188286658 40.0 35.0 41.0 31.0 41.0 38 36.780372384361236 40.0 35.0 41.0 31.0 41.0 39 36.73346911382945 40.0 35.0 41.0 31.0 41.0 40 36.619615078272496 39.0 35.0 41.0 31.0 41.0 41 36.60681836060415 39.0 35.0 41.0 31.0 41.0 42 36.56876622482694 39.0 35.0 41.0 31.0 41.0 43 36.4787958720107 39.0 35.0 41.0 30.0 41.0 44 36.30221198473883 39.0 35.0 41.0 30.0 41.0 45 36.206330632473254 39.0 35.0 40.0 30.0 41.0 46 36.2142279440686 39.0 35.0 40.0 30.0 41.0 47 36.18303817259282 39.0 35.0 40.0 30.0 41.0 48 36.12923812146004 39.0 35.0 40.0 30.0 41.0 49 36.06409298300818 39.0 35.0 40.0 30.0 41.0 50 35.94805597073631 38.0 35.0 40.0 29.0 41.0 51 35.56734901077722 38.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 2.0 14 5.0 15 17.0 16 22.0 17 73.0 18 211.0 19 381.0 20 718.0 21 1256.0 22 2079.0 23 3234.0 24 4711.0 25 7161.0 26 8983.0 27 9980.0 28 10505.0 29 12116.0 30 14896.0 31 19667.0 32 26486.0 33 36563.0 34 57653.0 35 91513.0 36 83277.0 37 146561.0 38 197546.0 39 77933.0 40 17.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.88067868942731 23.649528988357456 30.445641913152926 14.024150409062303 2 30.97380919603524 25.14381096601636 31.422081497797354 12.460298340151038 3 28.80988436123348 25.077436674008812 32.99761052548773 13.115068439269981 4 25.48969477658905 27.78464738042794 32.23197077564506 14.493687067337948 5 23.234566747954688 32.13499056010069 30.477231159534295 14.153211532410321 6 20.29160438955318 41.277680538074264 27.995693045940843 10.435022026431719 7 88.66253343297672 3.9093228838892387 6.061079098489616 1.3670645846444305 8 33.91566531623663 63.40920488514789 2.000201581183134 0.6749282174323473 9 87.67048359817495 3.1749036343612334 6.905015929830081 2.249596837633732 10 48.65690390969163 19.639784258967904 19.368755899937067 12.334555931403399 11 44.90097938955318 20.937278752359976 18.724925267463814 15.436816590623033 12 40.130511524543735 22.633018997797357 21.63359424166142 15.602875235997482 13 23.377763137193202 36.26666732221523 23.951040355569543 16.404529185022028 14 18.115142188483325 38.89840800031467 26.6952485840151 16.29120122718691 15 16.797612492133418 24.49911992605412 43.015826581183134 15.687441000629326 16 18.606926526117054 19.295129601950915 42.803797592825674 19.294146279106357 17 19.169878854625548 19.719556324732537 27.92132925582127 33.18923556482064 18 23.128982457520454 24.90080730805538 31.63583130113279 20.33437893329138 19 28.299048143486473 26.529804515418505 25.044987020138453 20.126160320956576 20 30.522832756450597 25.057647301762113 23.690951463184394 20.728568478602895 21 24.45708287444934 27.096690135305224 28.04977580239144 20.396451187853994 22 22.866681088735053 23.330071979232223 27.47883397577093 26.3244129562618 23 20.662562932662052 29.087181403398365 26.38611646475771 23.864139199181874 24 21.462127320641912 25.288236508810574 35.013299441472626 18.23633672907489 25 20.214536461611075 25.02937676998112 33.417858126179986 21.338228642227815 26 18.742379247954688 32.69216586689742 26.34026903713027 22.22518584801762 27 18.916427391441157 31.54905306010069 30.036456694461926 19.498062853996224 28 16.54883181246067 27.7828036500944 37.63164234581498 18.036722191629956 29 17.20642896475771 26.600112098804278 35.30092137350535 20.892537562932663 30 19.655886170547515 28.303350180931403 32.027931285399625 20.01283236312146 31 29.279421019509126 25.56381273599748 25.180685572687224 19.97608067180617 32 28.98307209723096 27.37189761642542 25.680459408432977 17.964570877910635 33 26.357231356198866 26.80329118156073 25.61322470893644 21.226252753303964 34 19.938714403713025 27.947756057268723 28.192111784140973 23.92141775487728 35 20.321964482378853 25.70639454845815 30.61219221994965 23.359448749213342 36 28.363332874449338 25.233785006293267 27.05772596758968 19.345156151667716 37 21.216296609502834 30.37324476872247 28.44912779263688 19.96133082913782 38 21.30159986626809 32.139415512901195 24.538452839836374 22.020531780994336 39 21.10419780522341 29.208007197923223 26.601095421648836 23.08669957520453 40 23.231616779421017 26.10144450125865 26.65591567023285 24.011023049087477 41 18.742379247954688 24.39525645059786 28.540453901825046 28.321910399622404 42 22.690297553492762 26.578478996224042 24.455362059471366 26.275861390811833 43 22.539726242920075 26.498952761170546 25.052484856828194 25.90883613908118 44 20.88196684235368 29.956438797986156 27.738799952800502 21.422794406859662 45 19.949899701069857 33.96876474984267 23.324172042164886 22.75716350692259 46 23.36030915670233 30.45559805695406 26.037282685651352 20.146810100692257 47 22.892616228760225 27.549387389867842 26.37468533668974 23.18331104468219 48 22.69140379169289 25.418403870358713 29.4708002281309 22.419392109817498 49 21.559107536186282 24.824722702957835 30.304658000314667 23.31151176054122 50 20.05634439899308 30.45338558055381 28.019292794210195 21.470977226242923 51 19.96944324260541 31.924559471365637 25.641618156073005 22.464379129955947 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 456.0 1 735.5 2 1015.0 3 3658.5 4 6302.0 5 4636.0 6 2970.0 7 3072.5 8 3175.0 9 3376.5 10 3578.0 11 3582.0 12 3586.0 13 3375.5 14 3165.0 15 3029.5 16 2894.0 17 2786.0 18 2678.0 19 2570.0 20 2462.0 21 2465.5 22 2469.0 23 2663.5 24 2858.0 25 3399.5 26 4745.5 27 5550.0 28 7036.5 29 8523.0 30 10621.0 31 12719.0 32 14405.5 33 16092.0 34 17762.0 35 19432.0 36 22674.0 37 25916.0 38 35171.5 39 44427.0 40 55331.0 41 66235.0 42 70748.0 43 75261.0 44 75506.0 45 75751.0 46 76313.0 47 76875.0 48 73071.0 49 69267.0 50 65183.0 51 61099.0 52 56214.0 53 51329.0 54 47250.0 55 43171.0 56 39566.5 57 35962.0 58 32535.0 59 29108.0 60 24646.0 61 20184.0 62 16949.0 63 13714.0 64 11126.0 65 8538.0 66 6748.5 67 4959.0 68 4125.5 69 3292.0 70 2712.5 71 2133.0 72 1700.5 73 1268.0 74 946.0 75 453.5 76 283.0 77 211.5 78 140.0 79 111.0 80 82.0 81 61.5 82 41.0 83 38.0 84 35.0 85 20.0 86 5.0 87 3.0 88 1.0 89 0.5 90 0.0 91 1.0 92 2.0 93 1.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 813568.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.889246307623942 #Duplication Level Percentage of deduplicated Percentage of total 1 71.41809739484286 18.489607142769625 2 6.167911264100639 3.193651478397392 3 3.11101606063282 2.4162558318209104 4 2.0916673791479807 2.1660676788953728 5 1.6716440291465864 2.1638802004622435 6 1.4326746545246452 2.2254520205807147 7 1.2114063520314051 2.195367819845287 8 1.0962235979599526 2.270432218865195 9 0.9589803734539681 2.2344551183274275 >10 10.5065959169288 55.589135791837904 >50 0.29706684974475484 4.719062921019327 >100 0.033855130538607905 1.5610053266284407 >500 0.001430498473462306 0.21751612380540233 >1k 0.001430498473462306 0.5581103267447355 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2218 0.272626258653241 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1202 0.1477442573945878 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1101 0.1353298064820642 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.007252005978602895 0.0 2 0.0 0.0 0.0 0.02913093926998112 0.0 3 0.0 0.0 0.0 0.04609325833857772 0.0 4 0.0 0.0 0.0 0.07608460509754562 0.0 5 0.0 0.0 0.0 0.14381096601636248 0.0 6 0.0 0.0 0.0 0.22702466173694147 0.0 7 0.0 0.0 0.0 0.27483873505349277 0.0 8 0.0 0.0 0.0 0.3764897341095028 0.0 9 0.0 0.0 0.0 0.47887822529893015 0.0 10 0.0 0.0 0.0 0.6786156780994336 0.0 11 0.0 0.0 0.0 0.8768781466331026 0.0 12 0.0 0.0 0.0 1.0417076384518564 0.0 13 0.0 0.0 0.0 1.117300582127124 0.0 14 0.0 0.0 0.0 1.1481523363750787 0.0 15 0.0 0.0 0.0 1.191172710824418 0.0 16 0.0 0.0 0.0 1.277582205789805 0.0 17 0.0 0.0 0.0 1.3797248662680932 0.0 18 0.0 0.0 0.0 1.5299274307740718 0.0 19 0.0 0.0 0.0 1.595932976714915 0.0 20 0.0 0.0 0.0 1.6728779893014474 0.0 21 0.0 0.0 0.0 1.7869434392699812 0.0 22 0.0 0.0 0.0 1.9024838735053493 0.0 23 0.0 0.0 0.0 2.0228180066079293 0.0 24 0.0 0.0 0.0 2.1217648678414096 0.0 25 0.0 0.0 0.0 2.2094035163624923 0.0 26 0.0 0.0 0.0 2.3002379641283826 0.0 27 0.0 0.0 0.0 2.3881224433606043 0.0 28 0.0 0.0 0.0 2.4787110604153555 0.0 29 0.0 0.0 0.0 2.574339207048458 0.0 30 0.0 0.0 0.0 2.6940587633731905 0.0 31 0.0 0.0 0.0 2.809845028319698 0.0 32 0.0 0.0 0.0 2.9132168423536817 0.0 33 0.0 0.0 0.0 3.0218740166771556 0.0 34 0.0 0.0 0.0 3.127089561044682 0.0 35 0.0 0.0 0.0 3.2720067652611706 0.0 36 0.0 0.0 0.0 3.3993470736312146 0.0 37 0.0 0.0 0.0 3.5222624292007554 0.0 38 0.0 0.0 0.0 3.6494798222152296 0.0 39 0.0 0.0 0.0 3.800911540276904 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCCGCAA 30 2.1647156E-6 45.000004 32 ATTACGA 30 2.1647156E-6 45.000004 2 TTCGTCG 20 7.032069E-4 45.000004 1 CGCGAGT 70 0.0 45.000004 4 TAGCCGT 20 7.032069E-4 45.000004 44 ATATACG 20 7.032069E-4 45.000004 1 TCTAACG 20 7.032069E-4 45.000004 1 GCGATAC 35 1.2113378E-7 45.000004 9 CGCACCG 20 7.032069E-4 45.000004 44 GCGTAAG 35 1.2113378E-7 45.000004 1 TCGCGGA 30 2.1647156E-6 45.000004 2 ATCGATC 20 7.032069E-4 45.000004 38 AATCGCG 20 7.032069E-4 45.000004 1 TAGTACG 40 6.8102963E-9 45.000004 1 CGACGGT 200 0.0 45.0 28 TAACGCC 85 0.0 45.0 12 CGTTAGA 55 1.8189894E-12 45.0 2 CTACGCG 25 3.8897968E-5 45.0 1 TATCGTG 50 2.1827873E-11 45.0 1 CACGACG 205 0.0 43.90244 26 >>END_MODULE