SRR1546924_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546924_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1043926
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2583	0.24743133133957768	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1862	0.1783651331607796	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1382	0.13238486252857	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1052	0.10077342646892595	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCATA	20	7.0329884E-4	45.000004	26
GATACGA	45	3.8562575E-10	45.000004	2
GGTACGC	20	7.0329884E-4	45.000004	45
GGTACGA	20	7.0329884E-4	45.000004	2
CGTATTT	20	7.0329884E-4	45.000004	23
TTAATCG	40	6.8139343E-9	45.000004	10
ACGTTGT	20	7.0329884E-4	45.000004	20
ACCGACA	20	7.0329884E-4	45.000004	27
CGACATA	20	7.0329884E-4	45.000004	29
AAGCGAT	20	7.0329884E-4	45.000004	45
CGTTCCC	20	7.0329884E-4	45.000004	19
TCGGCCA	20	7.0329884E-4	45.000004	13
GTTACAC	20	7.0329884E-4	45.000004	33
TTCCCGC	20	7.0329884E-4	45.000004	29
GCCGAAC	20	7.0329884E-4	45.000004	37
GTTAACG	20	7.0329884E-4	45.000004	27
TACGAAC	20	7.0329884E-4	45.000004	34
TCGTATT	20	7.0329884E-4	45.000004	22
AACTCCG	30	2.1653086E-6	45.000004	43
CGCACGA	30	2.1653086E-6	45.000004	39