SRR1546922_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546922_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	629436
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2081	0.33061343806201104	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1421	0.2257576624152416	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTG	20	7.030851E-4	45.000004	39
CGAACAC	20	7.030851E-4	45.000004	44
ACGTTAG	40	6.8066583E-9	45.000004	1
GTTTACG	60	0.0	45.000004	1
TTCACGA	40	6.8066583E-9	45.000004	2
TCGCTCA	20	7.030851E-4	45.000004	29
GTCGTCA	20	7.030851E-4	45.000004	15
ACGTCGA	30	2.1639298E-6	45.000004	2
TATAGCG	30	2.1639298E-6	45.000004	1
CCGAAAT	20	7.030851E-4	45.000004	44
ATACGAA	60	0.0	45.000004	19
TTCGCGA	30	2.1639298E-6	45.000004	2
TGTAACG	20	7.030851E-4	45.000004	1
GTAACGA	20	7.030851E-4	45.000004	2
AGTCGAT	20	7.030851E-4	45.000004	43
TTGGCGA	35	1.2107557E-7	45.0	2
CCGATCG	25	3.8887883E-5	45.0	40
TACGCTA	25	3.8887883E-5	45.0	1
GTAGCGA	50	2.1827873E-11	45.0	2
AGCGATA	25	3.8887883E-5	45.0	8