SRR1546920_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546920_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	890952
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2804	0.3147195359570437	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1572	0.17644048164210865	No Hit
AAGGAAGAAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	939	0.10539288311828246	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCGT	25	3.8900966E-5	45.000004	25
ATTTACG	35	1.2115197E-7	45.000004	1
TTTAGCG	35	1.2115197E-7	45.000004	1
AGCCGAC	20	7.032431E-4	45.000004	32
TCGTTAG	35	1.2115197E-7	45.000004	1
CGAACGT	25	3.8900966E-5	45.000004	37
GATCGTA	20	7.032431E-4	45.000004	22
GTATTCG	30	2.1649503E-6	45.000004	1
CACGGCG	20	7.032431E-4	45.000004	26
CTATCGT	30	2.1649503E-6	45.000004	13
ACGTTAG	30	2.1649503E-6	45.000004	1
ACCATAT	20	7.032431E-4	45.000004	45
AACCCGA	30	2.1649503E-6	45.000004	29
GCGAAAA	35	1.2115197E-7	45.000004	22
CGGTTGA	20	7.032431E-4	45.000004	2
ATGTGAC	35	1.2115197E-7	45.000004	43
TAGCGAA	25	3.8900966E-5	45.000004	2
CGTCTTA	20	7.032431E-4	45.000004	31
CACGACG	115	0.0	45.000004	26
GCTTGCA	20	7.032431E-4	45.000004	30