##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546920_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 890952 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.80077826863849 31.0 31.0 34.0 30.0 34.0 2 32.13889973870646 33.0 31.0 34.0 30.0 34.0 3 32.15013042228986 33.0 31.0 34.0 30.0 34.0 4 35.87060470148785 37.0 35.0 37.0 35.0 37.0 5 35.859085562409646 37.0 35.0 37.0 35.0 37.0 6 35.89941433433002 37.0 35.0 37.0 35.0 37.0 7 36.127171834172884 37.0 35.0 37.0 35.0 37.0 8 13.215856746491394 0.0 0.0 36.0 0.0 37.0 9 24.950400246028966 18.0 17.0 39.0 17.0 39.0 10 32.84578518259121 32.0 32.0 38.0 27.0 39.0 11 35.68845010730095 37.0 35.0 37.0 32.0 39.0 12 36.46469619014268 37.0 35.0 39.0 33.0 39.0 13 36.449971491168995 39.0 35.0 39.0 33.0 39.0 14 37.60767920157315 39.0 36.0 41.0 33.0 41.0 15 38.03351022277295 40.0 36.0 41.0 33.0 41.0 16 38.21297219154343 40.0 36.0 41.0 34.0 41.0 17 38.194227073961336 40.0 36.0 41.0 34.0 41.0 18 38.15612962314468 40.0 36.0 41.0 34.0 41.0 19 38.11114291230055 40.0 36.0 41.0 34.0 41.0 20 38.071136267722615 40.0 36.0 41.0 34.0 41.0 21 37.96128410958166 40.0 36.0 41.0 34.0 41.0 22 37.903536890876275 40.0 35.0 41.0 33.0 41.0 23 37.84921634386589 40.0 35.0 41.0 34.0 41.0 24 37.77264880711868 40.0 35.0 41.0 33.0 41.0 25 37.66151599637242 40.0 35.0 41.0 33.0 41.0 26 37.56651312304142 40.0 35.0 41.0 33.0 41.0 27 37.460302014025444 39.0 35.0 41.0 33.0 41.0 28 37.45540388258851 39.0 35.0 41.0 33.0 41.0 29 37.51635329400462 40.0 35.0 41.0 33.0 41.0 30 37.439752085409765 40.0 35.0 41.0 33.0 41.0 31 37.31760072372025 40.0 35.0 41.0 33.0 41.0 32 37.1547715252898 39.0 35.0 41.0 33.0 41.0 33 37.03979338954287 40.0 35.0 41.0 32.0 41.0 34 36.91203342043118 40.0 35.0 41.0 32.0 41.0 35 36.819763578733756 40.0 35.0 41.0 32.0 41.0 36 36.67592417997827 39.0 35.0 41.0 31.0 41.0 37 36.54005378516463 39.0 35.0 41.0 31.0 41.0 38 36.48690052887249 39.0 35.0 41.0 31.0 41.0 39 36.456512808770846 39.0 35.0 41.0 31.0 41.0 40 36.31197191318949 39.0 35.0 41.0 30.0 41.0 41 36.296251649920535 39.0 35.0 41.0 30.0 41.0 42 36.237609882462806 39.0 35.0 41.0 30.0 41.0 43 36.12063837333549 39.0 35.0 41.0 30.0 41.0 44 35.93732322279988 38.0 35.0 40.0 30.0 41.0 45 35.82016876330038 38.0 35.0 40.0 29.0 41.0 46 35.81113348418321 38.0 35.0 40.0 30.0 41.0 47 35.78016773069705 38.0 35.0 40.0 29.0 41.0 48 35.72222746006519 38.0 35.0 40.0 29.0 41.0 49 35.64427825516975 38.0 35.0 40.0 29.0 41.0 50 35.5155025186542 38.0 35.0 40.0 29.0 41.0 51 35.07981799243955 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 6.0 15 24.0 16 31.0 17 98.0 18 220.0 19 451.0 20 850.0 21 1448.0 22 2341.0 23 3571.0 24 5432.0 25 7879.0 26 10128.0 27 11443.0 28 12165.0 29 14307.0 30 17365.0 31 22417.0 32 30027.0 33 42548.0 34 69911.0 35 116101.0 36 90218.0 37 153097.0 38 212514.0 39 66328.0 40 30.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.62773752121326 24.252933940324507 28.3724600202929 13.746868518169327 2 31.464994747191767 25.71765931273514 30.130130467185662 12.687215472887429 3 30.54036581095278 24.930187035889702 31.57397929405849 12.955467859099032 4 26.68336790309691 28.305565282978208 29.89319289928077 15.117873914644111 5 24.349459903563826 31.567244924530165 29.261733516508187 14.821561655397822 6 21.622376963068717 41.09301062234554 26.75239519076224 10.532217223823507 7 87.06417405202525 4.903294453573256 6.363081288329786 1.6694502060717078 8 32.98269715989189 63.80579425154217 2.2779004929558493 0.933608095610089 9 85.1437563415313 5.0741229606084275 7.31509666065063 2.4670240372096366 10 60.45656780612199 17.862802934389283 11.45819303396816 10.222436225520566 11 52.915869766272486 18.483824044392964 15.677612261940038 12.92269392739452 12 45.858362740080274 21.077341989242967 19.803648232452478 13.260647038224283 13 21.102932593450603 43.076619166913595 21.744044572547118 14.076403667088687 14 14.402122673275327 45.85140389156767 26.523875584767755 13.222597850389247 15 13.35380581669944 22.452051288958327 50.5509836669091 13.643159227433127 16 16.49639935709219 16.404362973538415 48.64178990562903 18.45744776374036 17 16.606169580403883 16.945694044123588 27.511021918128026 38.9371144573445 18 22.60851314099974 22.665194084529805 34.21912740529231 20.50716536917814 19 30.717704208532 24.56619436288375 23.504184288266934 21.211917140317325 20 33.77263870556438 23.640330792231232 22.356984439116808 20.230046063087574 21 23.680175811940487 27.511358636604445 27.845383365209347 20.963082186245725 22 23.68859377385089 23.50530668318832 24.715921845396835 28.090177697563956 23 19.92598927888371 30.321498801282225 23.194291050471854 26.55822086936221 24 21.2196616652749 23.674339358349272 37.46071617775144 17.645282798624393 25 18.390440786933524 24.249678995052484 35.98790956190682 21.371970656107177 26 16.762631432445293 35.30134058849411 26.49839722005226 21.437630759008343 27 18.471140981781286 34.06434914563299 28.993481130296583 18.471028742289146 28 15.242796469394534 29.390359974499187 39.086168502904755 16.280675053201517 29 16.358905979222225 24.658230746437518 37.97881367346389 21.004049600876364 30 19.86605339008162 29.965026174249566 31.485422334761022 18.683498100907794 31 32.61881672637807 26.181769612728857 22.105231258249603 19.094182402643465 32 32.546758972424996 26.987985884761468 24.831977480268296 15.633277662545234 33 29.29821135145328 28.440926110497532 23.138844741355314 19.122017796693875 34 20.143172696172186 29.338842047607507 26.46854151514335 24.04944374107696 35 20.41860840988067 26.365168942883564 30.120028912893176 23.09619373434259 36 33.45208271601612 23.792190825094956 24.93748260287872 17.8182438560102 37 22.094231788020004 32.38749113308012 27.17856854241306 18.339708536486814 38 21.906904075640437 33.89991828964972 20.64106708329966 23.552110551410177 39 21.798256247250134 31.436598155680667 25.910374520737367 20.854771076331836 40 24.457209816017027 26.277397660031067 23.246819132792787 26.018573391159123 41 18.089975666478104 23.461869999730624 26.692347062468013 31.75580727132326 42 23.313489391123206 26.132384236187807 23.21707566737602 27.337050705312972 43 23.487797322414675 25.51046521024702 25.171052986019447 25.830684481318862 44 20.015780872594707 30.366057879661305 27.04186084098807 22.57630040675592 45 18.45621312932683 37.79092476362363 21.90746527310113 21.845396833948406 46 24.893933679928885 31.78308146791297 24.757113739011753 18.565871113146386 47 23.734387486643502 27.141080552038716 25.218754770178414 23.905777191139364 48 24.997755210157223 23.85987123885462 29.118628164031286 22.023745386956872 49 21.771879966597528 23.03446201366628 31.587111314638722 23.606546705097468 50 21.188459086460327 32.30331151397606 26.19591178873834 20.312317610825275 51 19.838891432984042 35.170132622183914 22.460357011376594 22.53061893345545 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1071.0 1 1407.5 2 1744.0 3 4705.5 4 7667.0 5 5586.5 6 3506.0 7 3723.0 8 3940.0 9 4079.5 10 4219.0 11 4283.5 12 4348.0 13 4118.5 14 3889.0 15 3754.0 16 3619.0 17 3368.0 18 3117.0 19 3083.0 20 3049.0 21 3000.5 22 2952.0 23 3074.5 24 3197.0 25 3837.5 26 5657.0 27 6836.0 28 8215.5 29 9595.0 30 10811.0 31 12027.0 32 12531.5 33 13036.0 34 13382.5 35 13729.0 36 18242.5 37 22756.0 38 34217.0 39 45678.0 40 60843.0 41 76008.0 42 84265.5 43 92523.0 44 89263.5 45 86004.0 46 81450.5 47 76897.0 48 72986.5 49 69076.0 50 64804.5 51 60533.0 52 55367.0 53 50201.0 54 47099.0 55 43997.0 56 41837.0 57 39677.0 58 37171.0 59 34665.0 60 30993.0 61 27321.0 62 24072.5 63 20824.0 64 17174.5 65 13525.0 66 11164.5 67 8804.0 68 7423.5 69 6043.0 70 5133.0 71 4223.0 72 3524.5 73 2826.0 74 2354.5 75 1336.0 76 789.0 77 578.5 78 368.0 79 288.0 80 208.0 81 141.0 82 74.0 83 46.5 84 19.0 85 10.5 86 2.0 87 2.0 88 2.0 89 2.0 90 2.0 91 2.5 92 3.0 93 1.5 94 0.0 95 0.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 890952.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.9232471119191 #Duplication Level Percentage of deduplicated Percentage of total 1 77.89048265122297 16.29721816178186 2 5.016652305670116 2.0992931173222913 3 1.807715309552238 1.1346982238928243 4 1.0952552707110752 0.916651867188787 5 0.8329119501495141 0.8713611277724364 6 0.6369854296406898 0.7996682130638467 7 0.5536906025539438 0.8109503710548485 8 0.5171025640949188 0.8655571784611977 9 0.47515308068813616 0.8947570790904756 >10 9.526212521404736 49.871267085736235 >50 1.5171774781178946 20.546569495428223 >100 0.12580154889731712 3.8972033695843886 >500 0.0037794456750266945 0.5004525168780463 >1k 0.0010798416214361985 0.49435219274454417 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2804 0.3147195359570437 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1572 0.17644048164210865 No Hit AAGGAAGAAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 939 0.10539288311828246 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.1223949213874597E-4 0.0 0.0 0.012683062611678295 0.0 2 1.1223949213874597E-4 0.0 0.0 0.03804918783503489 0.0 3 1.1223949213874597E-4 0.0 0.0 0.04960985552532572 0.0 4 1.1223949213874597E-4 0.0 0.0 0.07924108144995466 0.0 5 1.1223949213874597E-4 0.0 0.0 0.14007488618915498 0.0 6 1.1223949213874597E-4 0.0 0.0 0.19731702717991542 0.0 7 1.1223949213874597E-4 0.0 0.0 0.23458053856997907 0.0 8 1.1223949213874597E-4 0.0 0.0 0.3232497373595884 0.0 9 1.1223949213874597E-4 0.0 0.0 0.42594887266654097 0.0 10 1.1223949213874597E-4 0.0 0.0 0.6060932575492283 0.0 11 1.1223949213874597E-4 0.0 0.0 0.8378678088157386 0.0 12 1.1223949213874597E-4 0.0 0.0 1.0240731262739182 0.0 13 1.1223949213874597E-4 0.0 0.0 1.104099884168844 0.0 14 1.1223949213874597E-4 0.0 0.0 1.1340678285698893 0.0 15 1.1223949213874597E-4 0.0 0.0 1.1804227388231914 0.0 16 1.1223949213874597E-4 0.0 0.0 1.2826729161615888 0.0 17 1.1223949213874597E-4 0.0 0.0 1.3915452235361725 0.0 18 1.1223949213874597E-4 0.0 0.0 1.5594555037757365 0.0 19 1.1223949213874597E-4 0.0 0.0 1.6302786233152853 0.0 20 1.1223949213874597E-4 0.0 0.0 1.712999129021541 0.0 21 1.1223949213874597E-4 0.0 0.0 1.8208612809668758 0.0 22 1.1223949213874597E-4 0.0 0.0 1.9267031220537134 0.0 23 1.1223949213874597E-4 0.0 0.0 2.0485952105163916 0.0 24 1.1223949213874597E-4 0.0 0.0 2.1396214386409143 0.0 25 1.1223949213874597E-4 0.0 0.0 2.2077508103691335 0.0 26 1.1223949213874597E-4 0.0 0.0 2.282839030609954 0.0 27 1.1223949213874597E-4 0.0 0.0 2.345356427731236 0.0 28 1.1223949213874597E-4 0.0 0.0 2.418648816097837 0.0 29 1.1223949213874597E-4 0.0 0.0 2.4986755739927626 0.0 30 1.1223949213874597E-4 0.0 0.0 2.601935906760409 0.0 31 1.1223949213874597E-4 0.0 0.0 2.7086756637843563 0.0 32 1.1223949213874597E-4 0.0 0.0 2.8037425136258745 0.0 33 1.1223949213874597E-4 0.0 0.0 2.8981359265145596 0.0 34 1.1223949213874597E-4 0.0 0.0 2.9911824654975803 0.0 35 1.1223949213874597E-4 0.0 0.0 3.1403487505499736 0.0 36 1.1223949213874597E-4 0.0 0.0 3.2489965789402797 0.0 37 1.1223949213874597E-4 0.0 0.0 3.348777487451625 0.0 38 1.1223949213874597E-4 0.0 0.0 3.451476622758577 0.0 39 1.1223949213874597E-4 0.0 0.0 3.563716114897323 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCCGT 25 3.8900966E-5 45.000004 25 ATTTACG 35 1.2115197E-7 45.000004 1 TTTAGCG 35 1.2115197E-7 45.000004 1 AGCCGAC 20 7.032431E-4 45.000004 32 TCGTTAG 35 1.2115197E-7 45.000004 1 CGAACGT 25 3.8900966E-5 45.000004 37 GATCGTA 20 7.032431E-4 45.000004 22 GTATTCG 30 2.1649503E-6 45.000004 1 CACGGCG 20 7.032431E-4 45.000004 26 CTATCGT 30 2.1649503E-6 45.000004 13 ACGTTAG 30 2.1649503E-6 45.000004 1 ACCATAT 20 7.032431E-4 45.000004 45 AACCCGA 30 2.1649503E-6 45.000004 29 GCGAAAA 35 1.2115197E-7 45.000004 22 CGGTTGA 20 7.032431E-4 45.000004 2 ATGTGAC 35 1.2115197E-7 45.000004 43 TAGCGAA 25 3.8900966E-5 45.000004 2 CGTCTTA 20 7.032431E-4 45.000004 31 CACGACG 115 0.0 45.000004 26 GCTTGCA 20 7.032431E-4 45.000004 30 >>END_MODULE