SRR1546919_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546919_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	899318
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3819	0.42465512755221174	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2158	0.23995961384071038	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1070	0.1189790485679148	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGGGT	35	1.2115379E-7	45.000004	4
TCGATAG	30	2.164972E-6	45.000004	1
GCTACGA	30	2.164972E-6	45.000004	2
GCGTAAG	30	2.164972E-6	45.000004	1
TACCCGT	25	3.890127E-5	45.0	30
TTAGCGA	105	0.0	45.0	2
TATGCGA	80	0.0	45.0	2
ACGGGTA	20	7.0324674E-4	45.0	5
TAGCCGT	100	0.0	45.0	44
TCATACG	25	3.890127E-5	45.0	1
GTAACGA	25	3.890127E-5	45.0	2
CGGTCTA	185	0.0	43.783783	31
CGTTTTT	3330	0.0	43.513515	1
TAACGCC	105	0.0	42.857143	12
ATAACGC	105	0.0	42.857143	11
CACGACG	195	0.0	42.692307	26
AGACTTA	740	0.0	41.959457	8
TCACGAC	200	0.0	41.625	25
TAAGCGA	65	0.0	41.538464	2
GAGGGGA	7870	0.0	41.026047	7