##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546919_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 899318 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.723497138943067 31.0 31.0 34.0 30.0 34.0 2 32.0734234164111 33.0 31.0 34.0 30.0 34.0 3 32.11117313341888 33.0 31.0 34.0 30.0 34.0 4 35.85679036781205 37.0 35.0 37.0 35.0 37.0 5 35.83891237582257 37.0 35.0 37.0 35.0 37.0 6 35.8862882762271 37.0 35.0 37.0 35.0 37.0 7 36.10693214191198 37.0 35.0 37.0 35.0 37.0 8 13.299618155090858 0.0 0.0 36.0 0.0 37.0 9 24.9961871106772 18.0 17.0 39.0 17.0 39.0 10 32.68055793390102 32.0 32.0 38.0 27.0 39.0 11 35.56744332927841 37.0 35.0 37.0 32.0 39.0 12 36.55377185823035 37.0 35.0 39.0 33.0 39.0 13 36.7309327735017 39.0 35.0 39.0 33.0 39.0 14 37.86282160481609 40.0 37.0 41.0 33.0 41.0 15 38.20124583295342 40.0 37.0 41.0 33.0 41.0 16 38.304983331813666 40.0 37.0 41.0 34.0 41.0 17 38.27888355398202 40.0 37.0 41.0 34.0 41.0 18 38.237697899964196 40.0 37.0 41.0 34.0 41.0 19 38.21258553704029 40.0 37.0 41.0 34.0 41.0 20 38.177023033009455 40.0 37.0 41.0 34.0 41.0 21 38.092411138218075 40.0 36.0 41.0 34.0 41.0 22 38.05127441016415 40.0 36.0 41.0 33.0 41.0 23 37.96523476678995 40.0 36.0 41.0 33.0 41.0 24 37.86963120942759 40.0 36.0 41.0 33.0 41.0 25 37.764293609157164 40.0 35.0 41.0 33.0 41.0 26 37.71268338896809 40.0 35.0 41.0 33.0 41.0 27 37.65803531120249 40.0 35.0 41.0 33.0 41.0 28 37.59854133910363 40.0 35.0 41.0 33.0 41.0 29 37.599643285245044 40.0 35.0 41.0 33.0 41.0 30 37.5041831699132 40.0 35.0 41.0 33.0 41.0 31 37.441269940110175 40.0 35.0 41.0 33.0 41.0 32 37.302723841844596 40.0 35.0 41.0 33.0 41.0 33 37.172316132891815 40.0 35.0 41.0 32.0 41.0 34 37.00751569522683 40.0 35.0 41.0 32.0 41.0 35 36.87153932201957 40.0 35.0 41.0 31.0 41.0 36 36.761189034357145 40.0 35.0 41.0 31.0 41.0 37 36.69964906740441 40.0 35.0 41.0 31.0 41.0 38 36.59758950671509 39.0 35.0 41.0 31.0 41.0 39 36.53159282923282 39.0 35.0 41.0 31.0 41.0 40 36.41673468116951 39.0 35.0 41.0 30.0 41.0 41 36.35486446396047 39.0 35.0 41.0 30.0 41.0 42 36.32003473743437 39.0 35.0 41.0 30.0 41.0 43 36.220927413884745 39.0 35.0 41.0 30.0 41.0 44 35.97583279774229 39.0 35.0 40.0 29.0 41.0 45 35.91139285547493 38.0 35.0 40.0 29.0 41.0 46 35.914387346856174 38.0 35.0 40.0 29.0 41.0 47 35.86331531226996 38.0 35.0 40.0 29.0 41.0 48 35.79704843003253 38.0 35.0 40.0 29.0 41.0 49 35.699055284115296 38.0 35.0 40.0 29.0 41.0 50 35.58551702512348 38.0 35.0 40.0 28.0 41.0 51 35.19562045905898 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 3.0 14 7.0 15 19.0 16 35.0 17 94.0 18 198.0 19 446.0 20 850.0 21 1437.0 22 2293.0 23 3608.0 24 5383.0 25 7873.0 26 10313.0 27 11676.0 28 12629.0 29 14319.0 30 17627.0 31 22735.0 32 29996.0 33 42227.0 34 65619.0 35 99918.0 36 97428.0 37 163646.0 38 208074.0 39 80846.0 40 17.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.81517994747131 22.537300487702904 29.319551037564022 14.32796852726177 2 32.42623854965652 24.063123389057044 30.48710244874449 13.023535612541949 3 30.332874467096175 24.295188131450722 32.420678781031846 12.951258620421251 4 26.382658859268915 26.903386788655403 31.30027420778857 15.413680144287115 5 23.11373729870858 31.96922556870873 30.375239904016155 14.541797228566535 6 21.273342688570672 40.09004601264514 28.033131773188124 10.603479525596063 7 87.5614632421457 4.110225748845235 6.710863120720369 1.6174478882886811 8 33.48092665775621 63.31186521341727 2.359009827447021 0.8481983013794898 9 85.53681789978627 3.997918422626924 7.584747553145828 2.880516124440965 10 48.8984986400806 21.7950713763096 15.326391776879813 13.980038206729988 11 43.102662239608236 21.99933727557994 19.433615250667728 15.464385234144096 12 37.86469302293516 21.80085353567926 23.73042683455685 16.604026606828732 13 23.83695200140551 32.20217987408236 24.72139999421784 19.23946813029429 14 18.665922398973443 35.22235738637501 28.629250165125132 17.48247004952642 15 19.017188580680024 23.901000535961696 40.05802174536704 17.023789137991233 16 21.39510162145092 19.643663309307723 39.1032982771389 19.85793679210246 17 22.172134884434648 19.881843797188537 27.618261838415332 30.32775947996148 18 25.46996724184326 23.730760420674333 30.294400868213465 20.504871469268934 19 28.991858274826033 25.798883153678677 24.499898812211033 20.709359759284258 20 31.169730840481343 25.011953502543037 23.399398210644065 20.41891744633155 21 26.105337600270428 26.16338158471197 27.591797339761907 20.139483475255695 22 24.28584772016128 22.066721671310926 28.21593696556724 25.431493642960557 23 23.48312832613158 26.36197651998514 26.4836242574929 23.671270896390375 24 23.805261320244895 24.392706473127415 32.674871402551716 19.127160804075977 25 22.717214600397188 24.004745818498016 31.129478115638744 22.148561465466056 26 19.88951627789058 30.426612166108097 26.230654785070463 23.453216770930858 27 20.02194996653019 29.406728209598832 30.054886035862733 20.51643578800825 28 17.860311925258916 27.550766247311852 34.61990085820589 19.969020969223344 29 20.40890986280715 25.9932526647971 32.98944311133548 20.60839436106027 30 22.052488663631774 26.946530593182832 31.420809991571392 19.580170751614002 31 29.399611705759256 24.755314582828323 25.21455147122597 20.63052224018645 32 29.875639095403407 25.749178822174134 25.479863629995176 18.895318452427283 33 27.623043239432548 25.976684554295588 24.87140255171141 21.528869654560456 34 21.635839602899086 27.56099622158124 28.07471884250065 22.72844533301902 35 22.198043406225608 26.074536482089762 28.779475113363684 22.94794499832095 36 28.782699779165988 26.148703795542843 25.81745278088507 19.251143644406092 37 23.4492137375211 29.304873248394898 26.664761519284614 20.581151494799393 38 23.781354315158822 30.43261671622274 23.258958455184928 22.527070513433515 39 22.711432441027533 27.946399382643293 25.632090094938608 23.710078081390566 40 24.206676614945994 24.918326998903613 26.211862767119083 24.66313361903131 41 21.21196284295433 24.181435265389993 26.968547276936523 27.638054614719152 42 24.04633288781054 26.26234546623108 24.115162823383944 25.576158822574442 43 23.02133394416658 25.436386239350263 25.414480750969066 26.12779906551409 44 22.242966336712932 28.0049993439473 27.046828819171857 22.705205500167907 45 21.255329038226744 31.86314518335005 24.251488350060825 22.63003742836238 46 24.699605701209137 28.345590769894518 25.597953115583145 21.3568504133132 47 23.411629701618335 27.63861059158162 25.776199297690027 23.173560409110014 48 23.65826103780865 25.936320634080488 28.35115053851919 22.05426778959167 49 23.188127002906647 24.578069159073877 28.87732704115786 23.35647679686162 50 21.679316993543996 28.172237184177344 27.259879152869175 22.888566669409485 51 20.42203091676137 31.233556984292544 25.476416573447878 22.867995525498213 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 601.0 1 1054.5 2 1508.0 3 5786.0 4 10064.0 5 6947.0 6 3830.0 7 3826.0 8 3822.0 9 3957.0 10 4092.0 11 4059.5 12 4027.0 13 3890.5 14 3754.0 15 3464.5 16 3175.0 17 3034.5 18 2894.0 19 2847.0 20 2800.0 21 2983.0 22 3166.0 23 3238.5 24 3311.0 25 3823.5 26 5190.5 27 6045.0 28 6799.5 29 7554.0 30 8798.5 31 10043.0 32 11476.0 33 12909.0 34 15055.5 35 17202.0 36 21330.0 37 25458.0 38 33213.0 39 40968.0 40 50599.5 41 60231.0 42 64630.5 43 69030.0 44 69815.5 45 70601.0 46 72838.0 47 75075.0 48 74382.0 49 73689.0 50 70400.0 51 67111.0 52 63849.0 53 60587.0 54 57140.5 55 53694.0 56 50666.0 57 47638.0 58 44643.0 59 41648.0 60 37377.5 61 33107.0 62 29071.0 63 25035.0 64 21070.5 65 17106.0 66 14592.0 67 12078.0 68 10185.0 69 8292.0 70 7160.0 71 6028.0 72 4762.5 73 3497.0 74 2599.5 75 1272.5 76 843.0 77 621.5 78 400.0 79 298.0 80 196.0 81 144.0 82 92.0 83 64.5 84 37.0 85 31.0 86 25.0 87 17.0 88 9.0 89 6.5 90 4.0 91 2.0 92 0.0 93 1.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 899318.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.126279797741 #Duplication Level Percentage of deduplicated Percentage of total 1 70.62880597625815 18.452679467160817 2 6.352149281420279 3.3191605888681126 3 3.0003416721888088 2.3516329804928073 4 2.1235304830533575 2.2191980623713645 5 1.7308406620411392 2.2610213710897034 6 1.434459151603977 2.2486248691941406 7 1.2874893716614246 2.3546115292450884 8 1.148152276310378 2.3997558097038536 9 1.0121780120220933 2.3800001352489413 >10 11.075433060311566 56.87851679492984 >50 0.1766129919646393 2.843357671614352 >100 0.02786369965244439 1.3603049357822279 >500 8.573446046905958E-4 0.14189909053483302 >1k 0.0012860169070358935 0.7892366937639844 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3819 0.42465512755221174 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2158 0.23995961384071038 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1070 0.1189790485679148 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0068941130945894555 0.0 2 0.0 0.0 0.0 0.023462223596102824 0.0 3 0.0 0.0 0.0 0.03680566829530822 0.0 4 0.0 0.0 0.0 0.059823110401437535 0.0 5 0.0 0.0 0.0 0.10952744190597764 0.0 6 0.0 0.0 0.0 0.17646705614699137 0.0 7 0.0 0.0 0.0 0.22316911259421027 0.0 8 0.0 0.0 0.0 0.31579485788119444 0.0 9 0.0 0.0 0.0 0.42888055170696016 0.0 10 0.0 0.0 0.0 0.6130200885559947 0.0 11 0.0 0.0 0.0 0.801829831049751 0.0 12 0.0 0.0 0.0 0.9522771700332919 0.0 13 0.0 0.0 0.0 1.0189943935293189 0.0 14 0.0 0.0 0.0 1.0568008201770676 0.0 15 0.0 0.0 0.0 1.0956080051772565 0.0 16 0.0 0.0 0.0 1.1814508327421447 0.0 17 0.0 0.0 0.0 1.2739653826566353 0.0 18 0.0 0.0 0.0 1.4139603566257986 0.0 19 0.0 0.0 0.0 1.4797880171418787 0.0 20 0.0 0.0 0.0 1.5523985953800548 0.0 21 0.0 0.0 0.0 1.6571446362688171 0.0 22 0.0 0.0 0.0 1.7637809984899668 0.0 23 0.0 0.0 0.0 1.8858735174876962 0.0 24 0.0 0.0 0.0 1.972828298777518 0.0 25 0.0 0.0 0.0 2.046884416858108 0.0 26 0.0 0.0 0.0 2.1260555220733934 0.0 27 0.0 0.0 0.0 2.2107863959133476 0.0 28 0.0 0.0 0.0 2.303078555082852 0.0 29 0.0 0.0 0.0 2.4090477450690413 0.0 30 0.0 0.0 0.0 2.5173520378775915 0.0 31 0.0 0.0 0.0 2.622654055628821 0.0 32 0.0 0.0 0.0 2.720283592678007 0.0 33 0.0 0.0 0.0 2.8248072428217825 0.0 34 0.0 0.0 0.0 2.941673579312323 0.0 35 0.0 0.0 0.0 3.078777473596659 0.0 36 0.0 0.0 0.0 3.196755763812133 0.0 37 0.0 0.0 0.0 3.3235184884545843 0.0 38 1.1119537249337831E-4 0.0 0.0 3.4855301461774366 0.0 39 1.1119537249337831E-4 0.0 0.0 3.7284920350754684 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGGGT 35 1.2115379E-7 45.000004 4 TCGATAG 30 2.164972E-6 45.000004 1 GCTACGA 30 2.164972E-6 45.000004 2 GCGTAAG 30 2.164972E-6 45.000004 1 TACCCGT 25 3.890127E-5 45.0 30 TTAGCGA 105 0.0 45.0 2 TATGCGA 80 0.0 45.0 2 ACGGGTA 20 7.0324674E-4 45.0 5 TAGCCGT 100 0.0 45.0 44 TCATACG 25 3.890127E-5 45.0 1 GTAACGA 25 3.890127E-5 45.0 2 CGGTCTA 185 0.0 43.783783 31 CGTTTTT 3330 0.0 43.513515 1 TAACGCC 105 0.0 42.857143 12 ATAACGC 105 0.0 42.857143 11 CACGACG 195 0.0 42.692307 26 AGACTTA 740 0.0 41.959457 8 TCACGAC 200 0.0 41.625 25 TAAGCGA 65 0.0 41.538464 2 GAGGGGA 7870 0.0 41.026047 7 >>END_MODULE