SRR1546918_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546918_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	862309
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2331	0.27032073189541106	No Hit
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1983	0.2299639688325183	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1110	0.12872415804543383	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCG	992	0.11503996827123456	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	205	0.0	45.000004	25
GTCTAAT	35	1.211447E-7	45.000004	33
ATAGACG	35	1.211447E-7	45.000004	1
TCCAATC	70	0.0	45.000004	23
CGGTCTA	205	0.0	45.000004	31
GTAACGA	35	1.211447E-7	45.000004	2
GCCCGAC	35	1.211447E-7	45.000004	9
AATCGGT	70	0.0	45.000004	26
TCTGCGT	20	7.0323056E-4	45.0	16
GTCATCG	20	7.0323056E-4	45.0	43
CGTGGTA	20	7.0323056E-4	45.0	37
ATCTCGA	20	7.0323056E-4	45.0	2
AGATCGA	25	3.8899918E-5	45.0	8
TCCGCGA	20	7.0323056E-4	45.0	2
CTCGTAG	25	3.8899918E-5	45.0	1
AGATACC	20	7.0323056E-4	45.0	8
CACGGAC	25	3.8899918E-5	45.0	3
CGACGGT	210	0.0	45.0	28
TCACACG	20	7.0323056E-4	45.0	45
CGCATCG	50	2.1827873E-11	45.0	21