SRR1546917_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546917_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1043731
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3511	0.3363893570278166	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2275	0.2179680396577279	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2013	0.19286578629934342	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1327	0.12714003895639778	No Hit
AAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1214	0.11631349456900292	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1164	0.111522988202899	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1111	0.10644505145482887	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACGC	20	7.032987E-4	45.000004	6
GTCGAAA	25	3.890558E-5	45.000004	40
GGTCGAA	25	3.890558E-5	45.000004	39
ACGTTAG	25	3.890558E-5	45.000004	1
ACGTTAC	35	1.2117926E-7	45.000004	27
CGTTGGC	25	3.890558E-5	45.000004	24
ATTACGC	25	3.890558E-5	45.000004	19
CAATTCG	30	2.1653086E-6	45.000004	44
CGATTAC	40	6.8139343E-9	45.000004	10
CCGCTCG	50	2.1827873E-11	45.000004	19
CGTTCCG	20	7.032987E-4	45.000004	37
TCGGCGC	35	1.2117926E-7	45.000004	18
TTATACG	50	2.1827873E-11	45.000004	1
GTTACGA	30	2.1653086E-6	45.000004	2
CCGTACA	25	3.890558E-5	45.000004	30
ACTCGTT	30	2.1653086E-6	45.000004	39
CGTACGT	35	1.2117926E-7	45.000004	12
GTATCGA	30	2.1653086E-6	45.000004	2
GCGATAC	125	0.0	45.000004	9
CGTAAGA	60	0.0	45.000004	2