SRR1546916_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546916_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1257711
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6110	0.4858031773595047	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3512	0.27923744007963675	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1634	0.12991855839696084	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCTAG	20	7.0335396E-4	45.000004	31
CCGTCTA	20	7.0335396E-4	45.000004	30
CGTTAGA	155	0.0	45.000004	2
TACGATC	20	7.0335396E-4	45.000004	11
TAATGCG	40	6.8157533E-9	45.000004	1
TAGTCGA	30	2.1656651E-6	45.000004	2
TAATACG	25	3.8910162E-5	45.0	1
TATAGCG	45	3.8562575E-10	45.0	1
TTACGCG	45	3.8562575E-10	45.0	1
GTAACGA	45	3.8562575E-10	45.0	2
CGTTTTT	5370	0.0	42.65363	1
CGGTCTA	180	0.0	42.5	31
GAGCGAT	780	0.0	40.961536	7
ATATACG	55	6.184564E-11	40.909092	1
AGGGGAA	12120	0.0	40.655937	8
GAGGGGA	11985	0.0	40.588234	7
GGTACGA	50	1.0822987E-9	40.5	2
AATGCGA	175	0.0	39.857143	2
CGCGACC	605	0.0	39.79339	10
TAGCGGA	40	3.458572E-7	39.375004	2