SRR1546914_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546914_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1343774
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6325	0.4706892676893584	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3425	0.25487916866973165	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAGTTA	20	7.033712E-4	45.000004	6
TGCGATA	20	7.033712E-4	45.000004	4
ACGTCGA	20	7.033712E-4	45.000004	2
CGAAGTA	20	7.033712E-4	45.000004	35
GCGTATG	55	1.8189894E-12	45.0	1
CGTTTTT	6310	0.0	43.00317	1
CGTAGGA	90	0.0	42.5	2
CGTATGG	65	0.0	41.53846	2
GTTACGA	65	0.0	41.53846	2
GAGCGAT	950	0.0	40.263157	7
CGTTTGA	135	0.0	40.000004	2
CCGCTCG	45	1.9286745E-8	40.0	19
GCGCGAC	390	0.0	39.807693	9
CGGTCTA	125	0.0	39.600002	31
GTTTTTA	4680	0.0	39.567307	2
CGCATCG	40	3.4588084E-7	39.375004	21
TTTAGCG	120	0.0	39.374996	1
GAGGGGA	8985	0.0	38.714523	7
ACCCGTA	35	6.24908E-6	38.571426	33
TTAGCGA	270	0.0	38.333336	2