SRR1546913_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546913_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	842648
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8508	1.0096742649362487	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4703	0.5581215406670401	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1324	0.1571237337535958	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAC	30	2.1648084E-6	45.000004	44
ACACGTG	30	2.1648084E-6	45.000004	42
GCGACAC	30	2.1648084E-6	45.000004	32
GTCGTTT	30	2.1648084E-6	45.000004	9
GTCGATG	25	3.889916E-5	45.0	1
ACGCATT	20	7.032215E-4	45.0	39
CGGCAAC	25	3.889916E-5	45.0	36
GCACGGT	20	7.032215E-4	45.0	31
GCGCCTA	20	7.032215E-4	45.0	35
CGCCTAG	20	7.032215E-4	45.0	36
TGCGCGT	35	1.2114106E-7	45.0	37
TCTACGA	35	1.2114106E-7	45.0	2
TGCGATT	20	7.032215E-4	45.0	39
TAATTCG	20	7.032215E-4	45.0	38
TATTACG	20	7.032215E-4	45.0	1
ACTCGCG	20	7.032215E-4	45.0	11
TCATCGG	20	7.032215E-4	45.0	40
CGTAAGA	90	0.0	45.0	2
TGTACGT	20	7.032215E-4	45.0	15
CGATCTA	20	7.032215E-4	45.0	10