SRR1546912_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546912_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1079788
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16759	1.5520639236590887	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9112	0.8438693521320851	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1116	0.10335362126639674	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTTACG	25	3.890648E-5	45.0	1
ATATGCG	20	7.033098E-4	45.0	1
TATGCGA	80	0.0	45.0	2
GTTCGAT	25	3.890648E-5	45.0	39
GCGATCG	25	3.890648E-5	45.0	9
CCGACTA	20	7.033098E-4	45.0	32
TGTAACG	25	3.890648E-5	45.0	1
TATCGCG	30	2.1653796E-6	44.999996	1
CGTTTTT	12755	0.0	44.06507	1
GTTTTTA	8520	0.0	42.596832	2
TTTAGCG	80	0.0	42.1875	1
GGTACGA	80	0.0	42.1875	2
TAGCGGA	60	3.6379788E-12	41.249996	2
TAGCCGT	60	3.6379788E-12	41.249996	44
TTAGGCG	55	6.184564E-11	40.909092	1
CGTAAGA	55	6.184564E-11	40.909092	2
CCGCTCG	50	1.0822987E-9	40.5	19
GTTGCGA	100	0.0	40.5	2
GAGGGGA	8505	0.0	40.238094	7
AGGGGAA	8645	0.0	40.107	8