SRR1546911_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546911_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	805645
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4927	0.6115596819939303	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2716	0.33712118861285056	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	853	0.10587789907465447	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACTTAT	20	7.0320297E-4	45.0	35
ATTCGCG	35	1.2113196E-7	45.0	1
GCGTTGA	20	7.0320297E-4	45.0	2
CCGAACT	20	7.0320297E-4	45.0	12
ATCGGTA	20	7.0320297E-4	45.0	45
ATACCGG	20	7.0320297E-4	45.0	12
TAGACGA	60	0.0	44.999996	2
CGTTTTT	3990	0.0	43.139095	1
CGTTGAG	65	0.0	41.53846	3
TGCGTAG	60	3.6379788E-12	41.249996	1
CGGTCTA	105	0.0	40.714287	31
GAGGGGA	6745	0.0	40.53002	7
TTCGCGA	50	1.0804797E-9	40.5	2
TAACGCC	45	1.9270374E-8	40.0	12
AGGGGAA	6885	0.0	40.0	8
TACGTAG	45	1.9270374E-8	40.0	1
GTTTTTA	2975	0.0	39.478992	2
AACGCGA	40	3.4564982E-7	39.375	2
CGGTAGG	315	0.0	39.285713	31
GAGCGAT	465	0.0	39.19355	7