##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546911_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 805645 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.782348304774434 31.0 31.0 34.0 30.0 34.0 2 32.133116943566954 33.0 31.0 34.0 30.0 34.0 3 32.13765740493642 33.0 31.0 34.0 30.0 34.0 4 35.89228506352053 37.0 35.0 37.0 35.0 37.0 5 35.884744521470374 37.0 35.0 37.0 35.0 37.0 6 35.92515562065178 37.0 35.0 37.0 35.0 37.0 7 36.13641864592966 37.0 35.0 37.0 35.0 37.0 8 13.282096953372763 0.0 0.0 36.0 0.0 37.0 9 24.977379615091014 18.0 17.0 39.0 17.0 39.0 10 32.81401485766063 32.0 32.0 38.0 27.0 39.0 11 35.65988121318943 37.0 35.0 37.0 32.0 39.0 12 36.66139056284096 37.0 35.0 39.0 33.0 39.0 13 36.84213270112767 39.0 35.0 39.0 33.0 39.0 14 38.006562443756245 40.0 37.0 41.0 33.0 41.0 15 38.31995730129275 40.0 37.0 41.0 34.0 41.0 16 38.43187135773201 40.0 37.0 41.0 34.0 41.0 17 38.40956997188588 40.0 37.0 41.0 34.0 41.0 18 38.325775000155154 40.0 37.0 41.0 34.0 41.0 19 38.29968658652384 40.0 37.0 41.0 34.0 41.0 20 38.24702815756319 40.0 37.0 41.0 34.0 41.0 21 38.17061360773045 40.0 37.0 41.0 34.0 41.0 22 38.12654208739581 40.0 36.0 41.0 34.0 41.0 23 38.01384356633505 40.0 36.0 41.0 34.0 41.0 24 37.882952168759196 40.0 35.0 41.0 34.0 41.0 25 37.78996456255547 40.0 35.0 41.0 33.0 41.0 26 37.71074232447294 40.0 35.0 41.0 33.0 41.0 27 37.66502988288887 40.0 35.0 41.0 33.0 41.0 28 37.60369517591495 40.0 35.0 41.0 33.0 41.0 29 37.59153100931552 40.0 35.0 41.0 33.0 41.0 30 37.48126532157464 40.0 35.0 41.0 33.0 41.0 31 37.37345605074195 40.0 35.0 41.0 33.0 41.0 32 37.20643211339982 40.0 35.0 41.0 32.0 41.0 33 37.025286571628946 40.0 35.0 41.0 32.0 41.0 34 36.80515487590688 40.0 35.0 41.0 31.0 41.0 35 36.619540864772944 40.0 35.0 41.0 31.0 41.0 36 36.49331032899106 40.0 35.0 41.0 30.0 41.0 37 36.40734690837776 39.0 35.0 41.0 30.0 41.0 38 36.310332714781325 39.0 35.0 41.0 30.0 41.0 39 36.21485641939068 39.0 35.0 41.0 30.0 41.0 40 36.08519509213115 39.0 35.0 41.0 29.0 41.0 41 36.01758342694363 39.0 35.0 41.0 29.0 41.0 42 35.957234265712565 39.0 35.0 41.0 29.0 41.0 43 35.862737309857316 39.0 35.0 41.0 29.0 41.0 44 35.66618175499134 38.0 35.0 40.0 28.0 41.0 45 35.575203718759504 38.0 35.0 40.0 27.0 41.0 46 35.54572795710269 38.0 35.0 40.0 28.0 41.0 47 35.48115236859907 38.0 35.0 40.0 27.0 41.0 48 35.40227147192622 38.0 35.0 40.0 27.0 41.0 49 35.291413711994736 38.0 34.0 40.0 27.0 41.0 50 35.18125104729751 38.0 34.0 40.0 27.0 41.0 51 34.803283083740354 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 4.0 13 2.0 14 10.0 15 9.0 16 32.0 17 96.0 18 225.0 19 465.0 20 876.0 21 1446.0 22 2299.0 23 3614.0 24 5700.0 25 8344.0 26 10868.0 27 12037.0 28 12432.0 29 13204.0 30 15727.0 31 19629.0 32 26162.0 33 36474.0 34 57771.0 35 88679.0 36 87316.0 37 145092.0 38 184880.0 39 72231.0 40 19.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.930329115181 22.428116602225543 27.810760322474536 15.83079396011891 2 34.003562363075545 23.719007751553104 29.37273861316088 12.904691272210464 3 29.63302695355895 24.07884365942816 33.234489136033865 13.05364025097903 4 26.76749685034972 26.203973214008652 32.17322766230784 14.85530227333379 5 24.12514196699539 30.769383537414118 30.75361977049445 14.351854725096041 6 21.658919251034884 39.55836627795121 28.509579281197052 10.273135189816855 7 84.84841338306575 4.437686574111426 8.61682254591042 2.0970774969124117 8 32.158456888579956 63.616232956202786 3.2202769209763606 1.0050332342408879 9 81.77832668234768 4.947712702244785 10.021907912293877 3.2520527031136544 10 50.31335141408436 21.998026426031316 15.682217353797267 12.006404806087048 11 41.397265544998106 22.195011450452743 21.594002321121586 14.813720683427563 12 36.63375307983044 21.027499705205148 25.969502696597136 16.36924451836727 13 23.981778574930644 31.302124384809687 27.028033439045736 17.688063601213937 14 17.939290878736912 34.11887369747221 31.028554760471422 16.91328066331945 15 17.04832773740295 23.080761377529804 42.844677246181625 17.026233638885614 16 21.078390606284405 19.902810791353513 40.48433242929578 18.5344661730663 17 21.436612900222805 19.18239423070956 29.565255168219252 29.815737700848388 18 24.002010811213374 22.592829347913785 33.3371398072352 20.068020033637644 19 29.523177081717133 24.31741027375581 26.15333056122734 20.006082083299717 20 30.778941096885106 24.55461152244475 25.317106169590826 19.34934121107932 21 25.671108242464115 25.492369467941835 29.44944733722669 19.38707495236736 22 24.591228146392023 21.864592965884476 28.961267059312725 24.58291182841078 23 22.269858312283947 25.694319458322212 28.45111680703039 23.58470542236345 24 22.666186719957302 23.198182822459025 34.79969465459353 19.33593580299015 25 22.413469952646636 23.48714384127004 32.563598110830455 21.535788095252872 26 19.273377231907354 30.31310316578642 27.962440032520526 22.4510795697857 27 19.95432231317764 28.35653420551235 30.90629247373223 20.78285100757778 28 18.457260952404596 26.447504794295256 35.65292405463945 19.4423101986607 29 20.042326334800066 25.161454486777675 34.31238324572237 20.483835932699886 30 22.28276722377722 25.87231348795065 31.96792631990517 19.87699296836696 31 28.596342061329743 24.065934747934882 27.149799229189036 20.18792396154634 32 29.63141333962229 25.082263279732388 26.43943672461196 18.846886656033366 33 27.87307064525939 24.91457155446878 26.270379633709634 20.941978166562194 34 22.383307784446004 26.92811349912182 28.58914286068926 22.099435855742914 35 22.21549193503342 25.73950064854868 30.262832885452028 21.78217453096587 36 28.626131857083454 25.313258320972636 25.93338256924576 20.127227252698148 37 23.100000620620744 29.371373247522172 27.383525001706705 20.145101130150376 38 23.600220940985174 30.536402509790296 23.463187880518095 22.400188668706438 39 22.75754209360202 27.463088581198914 26.606756077428646 23.17261324777042 40 24.498259158810644 24.27495981480677 27.110700122262287 24.116080904120302 41 20.36852459830322 23.83729806552514 28.012710312854917 27.78146702331672 42 23.052957568159673 25.73590104822844 25.497334433900786 25.7138069497111 43 22.626218743987735 25.44979488484382 26.787232590036552 25.136753781131887 44 21.79557993905504 26.99687827765331 28.815669432566455 22.391872350725194 45 20.83709326067933 31.07609430952839 25.042915924507692 23.043896505284586 46 23.552060771183335 28.060870482656753 27.22452196687126 21.162546779288643 47 23.060777389545024 26.498147447076565 27.32518665168902 23.11588851168939 48 23.50017687691229 24.64398090970589 29.848878848624395 22.006963364757432 49 22.520340844913083 24.24169454288179 30.479926022007213 22.758038590197916 50 21.428917202986426 28.30390556634746 27.37508455957649 22.89209267108962 51 20.908092273892347 30.141935964351546 26.620533857964734 22.329437903791373 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 705.0 1 1318.5 2 1932.0 3 7396.5 4 12861.0 5 8847.0 6 4833.0 7 4910.0 8 4987.0 9 5056.5 10 5126.0 11 5000.5 12 4875.0 13 4687.5 14 4500.0 15 4281.0 16 4062.0 17 3829.0 18 3596.0 19 3648.5 20 3701.0 21 3639.5 22 3578.0 23 3851.5 24 4125.0 25 4814.0 26 6292.5 27 7082.0 28 7695.0 29 8308.0 30 9718.0 31 11128.0 32 12916.0 33 14704.0 34 15647.0 35 16590.0 36 19572.5 37 22555.0 38 29119.0 39 35683.0 40 43517.0 41 51351.0 42 56508.5 43 61666.0 44 61163.0 45 60660.0 46 60709.0 47 60758.0 48 59102.0 49 57446.0 50 54792.5 51 52139.0 52 48478.5 53 44818.0 54 43607.0 55 42396.0 56 42198.0 57 42000.0 58 40107.0 59 38214.0 60 35155.0 61 32096.0 62 29020.0 63 25944.0 64 22339.5 65 18735.0 66 15643.5 67 12552.0 68 10650.0 69 8748.0 70 7600.0 71 6452.0 72 5354.0 73 4256.0 74 3355.0 75 1866.5 76 1279.0 77 976.0 78 673.0 79 513.5 80 354.0 81 242.0 82 130.0 83 86.0 84 42.0 85 31.5 86 21.0 87 17.5 88 14.0 89 10.0 90 6.0 91 5.5 92 5.0 93 3.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 805645.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.63247599218193 #Duplication Level Percentage of deduplicated Percentage of total 1 70.2076127985646 19.400101751247416 2 6.076551623002343 3.3582033367573283 3 3.208419816961172 2.65969750695061 4 2.296167859787374 2.537952130383775 5 1.873073030062403 2.587882276740141 6 1.629134498723481 2.7010211954407164 7 1.4140416858166656 2.7351431054691435 8 1.2715993120340134 2.810994996916395 9 1.1718269231404501 2.9142431388603818 >10 10.718375661921478 54.28769438382163 >50 0.11197560656461263 1.9575573193348892 >100 0.01986663979875609 0.9895084162302279 >500 4.515145408808202E-4 0.10642424398491795 >1k 9.030290817616404E-4 0.9535761978625182 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4927 0.6115596819939303 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2716 0.33712118861285056 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 853 0.10587789907465447 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.00620620744869018 0.0 2 0.0 0.0 0.0 0.02035636043170379 0.0 3 0.0 0.0 0.0 0.0343823892657436 0.0 4 0.0 0.0 0.0 0.05262863916489272 0.0 5 0.0 0.0 0.0 0.10016818822185951 0.0 6 0.0 0.0 0.0 0.15937540728236382 0.0 7 0.0 0.0 0.0 0.2038118526149855 0.0 8 0.0 0.0 0.0 0.2805205766807961 0.0 9 0.0 0.0 0.0 0.39570778692848585 0.0 10 0.0 0.0 0.0 0.5655096227246492 0.0 11 0.0 0.0 0.0 0.7413935418205289 0.0 12 0.0 0.0 0.0 0.8809090852670841 0.0 13 0.0 0.0 0.0 0.9391233111357981 0.0 14 0.0 0.0 0.0 0.9629551477387683 0.0 15 0.0 0.0 0.0 0.9957239230678525 0.0 16 0.0 0.0 0.0 1.0553035145752783 0.0 17 0.0 0.0 0.0 1.126799024384189 0.0 18 0.0 0.0 0.0 1.2403726206952193 0.0 19 0.0 0.0 0.0 1.3005728329475141 0.0 20 0.0 0.0 0.0 1.3636279006262064 0.0 21 1.241241489738036E-4 0.0 0.0 1.4471634528855761 0.0 22 1.241241489738036E-4 0.0 0.0 1.5311955017408412 0.0 23 1.241241489738036E-4 0.0 0.0 1.626646972301696 0.0 24 1.241241489738036E-4 0.0 0.0 1.700128468494188 0.0 25 1.241241489738036E-4 0.0 0.0 1.7645489018115919 0.0 26 1.241241489738036E-4 0.0 0.0 1.821894258637489 0.0 27 1.241241489738036E-4 0.0 0.0 1.8883006783384741 0.0 28 1.241241489738036E-4 0.0 0.0 1.9632716643186514 0.0 29 1.241241489738036E-4 0.0 0.0 2.046310719982126 0.0 30 1.241241489738036E-4 0.0 0.0 2.1370454728819768 0.0 31 1.241241489738036E-4 0.0 0.0 2.2249253703554297 0.0 32 1.241241489738036E-4 0.0 0.0 2.3069714328271136 0.0 33 1.241241489738036E-4 0.0 0.0 2.4006851653023356 0.0 34 1.241241489738036E-4 0.0 0.0 2.49253703554295 0.0 35 1.241241489738036E-4 0.0 0.0 2.6041246454703995 0.0 36 1.241241489738036E-4 0.0 0.0 2.7054099510330234 0.0 37 1.241241489738036E-4 0.0 0.0 2.8043368977651446 0.0 38 1.241241489738036E-4 0.0 0.0 2.9333018885489266 0.0 39 1.241241489738036E-4 0.0 0.0 3.116260884136313 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACTTAT 20 7.0320297E-4 45.0 35 ATTCGCG 35 1.2113196E-7 45.0 1 GCGTTGA 20 7.0320297E-4 45.0 2 CCGAACT 20 7.0320297E-4 45.0 12 ATCGGTA 20 7.0320297E-4 45.0 45 ATACCGG 20 7.0320297E-4 45.0 12 TAGACGA 60 0.0 44.999996 2 CGTTTTT 3990 0.0 43.139095 1 CGTTGAG 65 0.0 41.53846 3 TGCGTAG 60 3.6379788E-12 41.249996 1 CGGTCTA 105 0.0 40.714287 31 GAGGGGA 6745 0.0 40.53002 7 TTCGCGA 50 1.0804797E-9 40.5 2 TAACGCC 45 1.9270374E-8 40.0 12 AGGGGAA 6885 0.0 40.0 8 TACGTAG 45 1.9270374E-8 40.0 1 GTTTTTA 2975 0.0 39.478992 2 AACGCGA 40 3.4564982E-7 39.375 2 CGGTAGG 315 0.0 39.285713 31 GAGCGAT 465 0.0 39.19355 7 >>END_MODULE