SRR1546910_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546910_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	635899
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1643	0.2583743644824099	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1334	0.20978174206910216	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	959	0.15081011292673838	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	85	0.0	45.000004	25
TTAGCGA	65	0.0	45.000004	2
CACGACG	85	0.0	45.000004	26
TGTGCGA	90	0.0	45.000004	2
ATGTACG	45	3.8380676E-10	45.000004	1
CTTGCGA	45	3.8380676E-10	45.000004	2
TCGTAGA	65	0.0	45.000004	2
CGTAAGA	55	1.8189894E-12	45.000004	2
CGGTCTA	85	0.0	45.000004	31
GCTAATG	55	1.8189894E-12	45.000004	1
ACGAGAT	55	1.8189894E-12	45.000004	5
AACCGTG	25	3.8888327E-5	45.0	29
AGCCGTT	40	6.8066583E-9	45.0	45
ATCTCGT	25	3.8888327E-5	45.0	19
CTCACGT	80	0.0	45.0	45
GGTACGA	20	7.030906E-4	45.0	2
CTACTTA	20	7.030906E-4	45.0	21
CTCCGAT	25	3.8888327E-5	45.0	28
TCCGATA	25	3.8888327E-5	45.0	29
CGTGCCG	25	3.8888327E-5	45.0	41