##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546910_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 635899 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.808842284702443 31.0 31.0 34.0 30.0 34.0 2 32.144839038903974 33.0 31.0 34.0 30.0 34.0 3 32.17690230681288 33.0 31.0 34.0 30.0 34.0 4 35.888663136755994 37.0 35.0 37.0 35.0 37.0 5 35.85737043146789 37.0 35.0 37.0 35.0 37.0 6 35.89808129907422 37.0 35.0 37.0 35.0 37.0 7 36.1326877381471 37.0 35.0 37.0 35.0 37.0 8 13.313401971067732 0.0 0.0 37.0 0.0 37.0 9 25.02825920468502 18.0 17.0 39.0 17.0 39.0 10 32.90119028336261 32.0 32.0 38.0 27.0 39.0 11 35.718570087388095 37.0 35.0 37.0 32.0 39.0 12 36.43996452266791 37.0 35.0 39.0 33.0 39.0 13 36.34180428023947 38.0 35.0 39.0 32.0 39.0 14 37.47793753410526 39.0 35.0 41.0 33.0 41.0 15 37.94583416548854 40.0 36.0 41.0 33.0 41.0 16 38.14261698791789 40.0 36.0 41.0 34.0 41.0 17 38.15748570134566 40.0 36.0 41.0 34.0 41.0 18 38.12450090344536 40.0 36.0 41.0 34.0 41.0 19 38.060893317964016 40.0 36.0 41.0 34.0 41.0 20 38.03767736700325 40.0 36.0 41.0 34.0 41.0 21 37.91965390730289 40.0 35.0 41.0 34.0 41.0 22 37.86088828571833 40.0 35.0 41.0 33.0 41.0 23 37.791013981780125 40.0 35.0 41.0 33.0 41.0 24 37.694368130788064 40.0 35.0 41.0 33.0 41.0 25 37.56051511324912 40.0 35.0 41.0 33.0 41.0 26 37.485858603331664 39.0 35.0 41.0 33.0 41.0 27 37.386081751976334 39.0 35.0 41.0 33.0 41.0 28 37.40974431474181 39.0 35.0 41.0 33.0 41.0 29 37.46586486218723 40.0 35.0 41.0 33.0 41.0 30 37.418203205225986 40.0 35.0 41.0 33.0 41.0 31 37.285205669453795 39.0 35.0 41.0 33.0 41.0 32 37.105818691333056 39.0 35.0 41.0 33.0 41.0 33 36.97845412557655 39.0 35.0 41.0 32.0 41.0 34 36.88121069540917 40.0 35.0 41.0 32.0 41.0 35 36.802608590357906 40.0 35.0 41.0 32.0 41.0 36 36.65578181440763 39.0 35.0 41.0 31.0 41.0 37 36.535967189758125 39.0 35.0 41.0 31.0 41.0 38 36.48262695805466 39.0 35.0 41.0 31.0 41.0 39 36.47417750303114 39.0 35.0 41.0 31.0 41.0 40 36.3461068503017 39.0 35.0 41.0 30.0 41.0 41 36.34017823585192 39.0 35.0 41.0 31.0 41.0 42 36.308031621373836 39.0 35.0 41.0 31.0 41.0 43 36.19245351856191 39.0 35.0 41.0 30.0 41.0 44 36.008364535877554 38.0 35.0 40.0 30.0 41.0 45 35.87562175754326 38.0 35.0 40.0 29.0 41.0 46 35.90977026225863 38.0 35.0 40.0 30.0 41.0 47 35.86346416647927 38.0 35.0 40.0 30.0 41.0 48 35.83969938622328 38.0 35.0 40.0 30.0 41.0 49 35.79368421714769 38.0 35.0 40.0 29.0 41.0 50 35.646835425122546 38.0 35.0 40.0 29.0 41.0 51 35.17943730057761 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 3.0 14 2.0 15 13.0 16 31.0 17 59.0 18 138.0 19 330.0 20 613.0 21 1068.0 22 1701.0 23 2720.0 24 4042.0 25 5709.0 26 7346.0 27 8112.0 28 8756.0 29 10017.0 30 12087.0 31 15475.0 32 21330.0 33 30274.0 34 50916.0 35 85183.0 36 60279.0 37 106031.0 38 156527.0 39 47127.0 40 9.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.41253721109799 23.073632762435544 30.40986068542331 14.103969341043154 2 29.538967666248883 26.115153507082102 31.026625297413585 13.319253529255432 3 29.318649659773016 24.31596841636801 31.96419557193831 14.401186351920666 4 25.915436256386627 27.772177657143665 31.435495259467306 14.8768908270024 5 23.709582811106795 31.974260063311945 30.310473833108713 14.005683292472545 6 21.165468101066367 39.48960448121478 28.22885395322213 11.11607346449672 7 87.26212810524942 4.625577332249304 6.480431640873786 1.6318629216274911 8 33.688211492705605 63.39623116249593 2.1064665929652353 0.8090907518332314 9 86.79727440992988 4.273949164883103 6.616931305128644 2.311845120058374 10 62.442935120199905 17.904887411365642 10.961331909627157 8.690845558807295 11 57.01833152749101 17.258243840609907 16.077238680985502 9.646185950913589 12 48.98450854616849 20.998774962690618 18.51158753198228 11.50512895915861 13 21.766349687607622 46.68005453696263 19.49318995626664 12.060405819163107 14 12.903149714026913 48.257191786746006 25.50200582167923 13.337652677547847 15 11.628418978485577 22.353235340832427 53.68352521390975 12.33482046677224 16 14.005368777117122 15.941997078152347 52.05968243384562 17.992951710884906 17 14.653270409294558 15.629054299503537 28.008693204423974 41.70898208677793 18 21.97109918398991 21.797014934761652 34.76794270788285 21.463943173365582 19 30.190486225013718 24.140468848040335 23.95443301530589 21.714611911640056 20 34.12444429068138 23.064197301772765 22.429348056845505 20.382010350700348 21 22.033687739719674 28.911981305207274 27.08732047070368 21.96701048436937 22 23.01670548310345 24.091247194916175 24.86133804267659 28.03070927930379 23 18.950021937446042 31.221467560099953 23.620732223198967 26.207778279255038 24 20.569776017889634 22.96339513035875 40.061550655056855 16.40527819669476 25 15.46456276861577 24.745596391879843 38.16958353449211 21.620257305012274 26 14.73976213203669 37.74467328931167 26.389725412368946 21.125839166282695 27 16.64037842487565 35.453114409678264 29.78224529367085 18.124261871775236 28 13.114975805906285 29.242222428404514 42.37654092866949 15.266260837019715 29 14.175364326724841 24.107130220365182 41.21456394804836 20.50294150486162 30 17.76823048943307 30.188913648236593 32.42385976389332 19.618996098437016 31 31.210774038015472 25.761638247583342 23.956477365116157 19.07111034928503 32 32.80410882860328 27.087005955348253 24.83271714533283 15.27616807071563 33 28.989194824964343 28.035269751957465 23.745123046269924 19.230412376808268 34 18.874066479110677 29.516008045302794 27.513488777305827 24.0964366982807 35 19.386569250777246 25.358429561927288 31.63599879855134 23.619002388744125 36 31.887611082892093 23.551853360360685 26.046589159599243 18.513946397147972 37 20.323667752268832 31.698587354281106 29.34648426872821 18.63126062472185 38 19.725774061604124 33.946743114865725 22.86275021662245 23.464732606907702 39 20.37729262036896 32.10242507064801 26.57434592600397 20.945936382979056 40 23.812429332331078 25.862440418997355 24.340500614091233 25.984629634580337 41 16.25132293021376 22.694169986114147 27.99642710556236 33.05807997810973 42 22.739460197295482 25.84372675534951 23.12474150769226 28.292071539662743 43 23.288604007869175 26.350882765973843 24.008215141083724 26.352298085073254 44 20.041861993807192 31.746236430628134 26.98463120715711 21.22727036840756 45 16.167347330315035 40.197421288600864 19.990438733195052 23.64479264788905 46 22.781290739567133 33.44257500011794 25.020954585555256 18.75517967475967 47 22.33735231538342 27.419291428355763 25.929274932025372 24.314081324235453 48 24.180255040501713 22.53439618555777 30.78602105051274 22.49932772342778 49 20.53958254376874 22.04846996142469 32.39193645531759 25.020011039488978 50 18.83506657503786 33.43707098139799 26.370068202654824 21.357794240909328 51 17.435315985714713 36.45594662045388 22.752669842223373 23.35606755160804 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 697.0 1 852.0 2 1007.0 3 2760.0 4 4513.0 5 3414.5 6 2316.0 7 2504.5 8 2693.0 9 2917.0 10 3141.0 11 3092.0 12 3043.0 13 2964.0 14 2885.0 15 2743.5 16 2602.0 17 2401.5 18 2201.0 19 2049.0 20 1897.0 21 2030.5 22 2164.0 23 2243.0 24 2322.0 25 2447.0 26 3410.5 27 4249.0 28 4752.0 29 5255.0 30 6245.5 31 7236.0 32 8442.5 33 9649.0 34 11223.0 35 12797.0 36 15727.0 37 18657.0 38 27605.5 39 36554.0 40 49214.0 41 61874.0 42 68007.0 43 74140.0 44 71699.0 45 69258.0 46 65009.5 47 60761.0 48 56506.0 49 52251.0 50 47936.0 51 43621.0 52 38906.0 53 34191.0 54 30132.0 55 26073.0 56 24099.5 57 22126.0 58 20446.5 59 18767.0 60 16750.0 61 14733.0 62 12795.5 63 10858.0 64 8924.5 65 6991.0 66 5610.0 67 4229.0 68 3400.0 69 2571.0 70 2301.0 71 2031.0 72 1698.5 73 1366.0 74 1108.5 75 617.5 76 384.0 77 307.5 78 231.0 79 168.0 80 105.0 81 62.5 82 20.0 83 14.5 84 9.0 85 6.0 86 3.0 87 2.0 88 1.0 89 1.0 90 1.0 91 1.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 635899.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.182064130959247 #Duplication Level Percentage of deduplicated Percentage of total 1 77.64047710113725 17.222260422156996 2 4.8980991623009285 2.1729989947591397 3 1.7120927407109534 1.1393325291780045 4 1.1112677693662305 0.9860085170699904 5 0.843318827838985 0.9353276160984876 6 0.6822761762662414 0.9080576338178054 7 0.583672348651272 0.9062940228475086 8 0.5406351887261588 0.9593923542221529 9 0.47359136196401186 0.9454710566658642 >10 10.346024839491298 56.23224821951317 >50 1.1144254215420288 15.476617888297945 >100 0.051982783241257574 1.4942723537793279 >500 7.120929211131174E-4 0.1514806751875661 >1k 0.0014241858422262348 0.4702377164060316 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1643 0.2583743644824099 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1334 0.20978174206910216 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 959 0.15081011292673838 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.009592718340491179 0.0 2 0.0 0.0 0.0 0.036326523551696105 0.0 3 0.0 0.0 0.0 0.0542538988109747 0.0 4 0.0 0.0 0.0 0.08947961861868 0.0 5 0.0 0.0 0.0 0.16197540804435925 0.0 6 0.0 0.0 0.0 0.24563649258765935 0.0 7 0.0 0.0 0.0 0.29910410301006923 0.0 8 0.0 0.0 0.0 0.4219223493038989 0.0 9 0.0 0.0 0.0 0.5430107611428859 0.0 10 0.0 0.0 0.0 0.742728011838358 0.0 11 0.0 0.0 0.0 0.9424452625338301 0.0 12 0.0 0.0 0.0 1.1067795357438839 0.0 13 0.0 0.0 0.0 1.1885535281546282 0.0 14 0.0 0.0 0.0 1.216859910142963 0.0 15 0.0 0.0 0.0 1.2613638329357335 0.0 16 0.0 0.0 0.0 1.3549321511749508 0.0 17 0.0 0.0 0.0 1.458722218465511 0.0 18 0.0 0.0 0.0 1.6206976265098703 0.0 19 0.0 0.0 0.0 1.68580230508304 0.0 20 0.0 0.0 0.0 1.7553101986321726 0.0 21 0.0 0.0 0.0 1.8616163887661406 0.0 22 0.0 0.0 0.0 1.9580153452041913 0.0 23 0.0 0.0 0.0 2.0896400214499473 0.0 24 0.0 0.0 0.0 2.17927689774634 0.0 25 0.0 0.0 0.0 2.2476839875514822 0.0 26 0.0 0.0 0.0 2.327413630151958 0.0 27 0.0 0.0 0.0 2.3940908855022576 0.0 28 0.0 0.0 0.0 2.4689455400936313 0.0 29 0.0 0.0 0.0 2.5455300291398477 0.0 30 0.0 0.0 0.0 2.660170876192603 0.0 31 0.0 0.0 0.0 2.7718238273688116 0.0 32 0.0 0.0 0.0 2.8597308692103622 0.0 33 0.0 0.0 0.0 2.954871764226709 0.0 34 0.0 0.0 0.0 3.0556739356407228 0.0 35 0.0 0.0 0.0 3.1954760111275533 0.0 36 0.0 0.0 0.0 3.3035120357163636 0.0 37 0.0 0.0 0.0 3.4000682498321275 0.0 38 0.0 0.0 0.0 3.493007537360493 0.0 39 0.0 0.0 0.0 3.5887774630876916 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 85 0.0 45.000004 25 TTAGCGA 65 0.0 45.000004 2 CACGACG 85 0.0 45.000004 26 TGTGCGA 90 0.0 45.000004 2 ATGTACG 45 3.8380676E-10 45.000004 1 CTTGCGA 45 3.8380676E-10 45.000004 2 TCGTAGA 65 0.0 45.000004 2 CGTAAGA 55 1.8189894E-12 45.000004 2 CGGTCTA 85 0.0 45.000004 31 GCTAATG 55 1.8189894E-12 45.000004 1 ACGAGAT 55 1.8189894E-12 45.000004 5 AACCGTG 25 3.8888327E-5 45.0 29 AGCCGTT 40 6.8066583E-9 45.0 45 ATCTCGT 25 3.8888327E-5 45.0 19 CTCACGT 80 0.0 45.0 45 GGTACGA 20 7.030906E-4 45.0 2 CTACTTA 20 7.030906E-4 45.0 21 CTCCGAT 25 3.8888327E-5 45.0 28 TCCGATA 25 3.8888327E-5 45.0 29 CGTGCCG 25 3.8888327E-5 45.0 41 >>END_MODULE