##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546909_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2396268 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.695163896525763 31.0 31.0 34.0 30.0 34.0 2 32.04983541073035 33.0 31.0 34.0 30.0 34.0 3 31.92857894025209 31.0 31.0 34.0 30.0 34.0 4 35.76480760916559 37.0 35.0 37.0 35.0 37.0 5 35.79953327424145 37.0 35.0 37.0 35.0 37.0 6 35.86161940150267 37.0 35.0 37.0 35.0 37.0 7 36.10630280085533 37.0 35.0 37.0 35.0 37.0 8 13.273272438642088 0.0 0.0 36.0 0.0 37.0 9 24.936026354314293 18.0 17.0 39.0 17.0 39.0 10 32.63444781635443 32.0 32.0 38.0 27.0 39.0 11 35.520588682067284 37.0 34.0 37.0 32.0 39.0 12 36.75074323907009 38.0 35.0 39.0 33.0 39.0 13 37.091331603977515 39.0 37.0 39.0 33.0 39.0 14 38.34615410296344 40.0 38.0 41.0 34.0 41.0 15 38.566031846187485 40.0 38.0 41.0 34.0 41.0 16 38.60676769042528 40.0 38.0 41.0 34.0 41.0 17 38.56834627846301 40.0 38.0 41.0 34.0 41.0 18 38.46400903404795 40.0 38.0 41.0 34.0 41.0 19 38.38902117793168 40.0 37.0 41.0 34.0 41.0 20 38.29781143010715 40.0 37.0 41.0 34.0 41.0 21 38.24974376822626 40.0 37.0 41.0 34.0 41.0 22 38.21174927011503 40.0 37.0 41.0 34.0 41.0 23 37.9917000101825 39.0 37.0 41.0 34.0 41.0 24 37.63956034967708 39.0 35.0 41.0 33.0 41.0 25 37.53790018478735 39.0 35.0 41.0 33.0 41.0 26 37.467347141471656 39.0 35.0 41.0 33.0 41.0 27 37.42508392216563 39.0 35.0 41.0 33.0 41.0 28 37.28785135886303 39.0 35.0 41.0 33.0 41.0 29 37.19607698304196 39.0 35.0 41.0 33.0 41.0 30 37.023621314477346 39.0 35.0 41.0 32.0 41.0 31 36.8351670180464 39.0 35.0 41.0 31.0 41.0 32 36.472021910737865 39.0 35.0 41.0 30.0 41.0 33 36.05777567450719 39.0 35.0 41.0 28.0 41.0 34 35.62428743362595 39.0 35.0 41.0 24.0 41.0 35 35.296274456780296 39.0 35.0 41.0 22.0 41.0 36 35.10969390735928 39.0 35.0 41.0 21.0 41.0 37 35.03182949486452 39.0 35.0 41.0 20.0 41.0 38 34.914723645268396 39.0 35.0 41.0 19.0 41.0 39 34.79543773901751 39.0 35.0 41.0 18.0 41.0 40 34.69234492969902 39.0 35.0 41.0 18.0 41.0 41 34.59101402681169 39.0 34.0 40.0 18.0 41.0 42 34.512611277202716 39.0 34.0 40.0 18.0 41.0 43 34.402290561823634 38.0 34.0 40.0 18.0 41.0 44 34.2156340609648 38.0 34.0 40.0 17.0 41.0 45 34.133407865898135 38.0 34.0 40.0 17.0 41.0 46 34.092761327197124 38.0 34.0 40.0 17.0 41.0 47 34.050988453712186 38.0 33.0 40.0 18.0 41.0 48 33.956844142641806 38.0 33.0 40.0 17.0 41.0 49 33.85792115072271 38.0 33.0 40.0 17.0 41.0 50 33.767058609471064 38.0 33.0 40.0 17.0 41.0 51 33.429164434028245 37.0 33.0 40.0 15.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 7.0 12 8.0 13 13.0 14 27.0 15 44.0 16 155.0 17 381.0 18 1005.0 19 2037.0 20 3970.0 21 6852.0 22 11125.0 23 17885.0 24 29726.0 25 45805.0 26 59792.0 27 61969.0 28 56482.0 29 51168.0 30 52887.0 31 62186.0 32 76899.0 33 102870.0 34 147523.0 35 218340.0 36 245360.0 37 405566.0 38 503450.0 39 232694.0 40 40.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.616720667304325 21.510198358447386 25.325172309608107 23.547908664640183 2 40.19671422395158 22.376795917651947 25.614497209827945 11.811992648568523 3 27.183436911063367 22.510420370342548 38.333608761624326 11.972533956969755 4 24.391220013788107 24.100517972113302 38.10888431511 13.399377698988593 5 21.020854094784056 28.127863828252934 37.36927589067667 13.482006186286341 6 19.41352135904665 36.81804372465851 34.35533921915245 9.41309569714239 7 77.96932563469528 3.4236571201551746 16.896857947441603 1.7101592977079356 8 29.39258046261937 63.48096289730532 6.168759087047024 0.9576975530282923 9 73.77822514009284 4.9004952701450755 18.21494924607765 3.106330343684429 10 34.74419388816276 28.933533310965213 24.56933030862992 11.752942492242104 11 27.473012200638657 23.52286972909541 33.80844713529538 15.195670934970545 12 25.743990238153664 20.851173574908984 36.63192097044237 16.772915216494983 13 21.598502337801946 24.08286552255424 37.36405944577151 16.954572693872304 14 18.04051132844907 26.88109176436025 37.709095977578464 17.369300929612212 15 17.37330715929938 23.94740488125702 41.71273830806905 16.966549651374553 16 20.250572974308383 22.481542131347577 40.27420972946265 16.99367516488139 17 19.986287009633312 22.451203287779165 36.431317365169505 21.131192337418018 18 20.868784292908806 23.60136679202827 37.527355037082664 18.00249387798026 19 22.618713766573688 25.153154822415523 34.323164186977415 17.90496722403337 20 23.78102115456201 24.520128800284443 34.12564871708841 17.573201328065142 21 22.43488624811582 24.723194567552547 36.194240377119755 16.64767880721188 22 21.143419684275717 21.742058901591975 36.46349239734454 20.651029016787774 23 19.645715754665172 25.03630645653992 36.012249047268504 19.30572874152641 24 19.480542243188157 24.630383579799922 37.993204432893144 17.895869744118773 25 20.478802871798983 24.57846952010376 36.104475793191746 18.83825181490551 26 18.85022877240776 26.77388338866938 34.594252395808816 19.78163544311404 27 18.935069032345297 24.898675774162154 36.72514927378741 19.441105919705144 28 18.267531010721672 24.995659917838907 38.29680152637351 18.44000754506591 29 19.07457763488892 24.600169930909228 37.54650982277442 18.778742611427436 30 20.4995434567419 24.172504911804523 36.93309763348674 18.39485399796684 31 23.283080189694978 23.58964022388147 34.040766725591624 19.086512860831927 32 22.894893225632526 24.892791624309137 34.136290264694935 18.076024885363406 33 22.35989463615923 24.71075856289864 33.03553692658751 19.89380987435462 34 19.985786230922418 26.42012496098099 33.87667823465489 19.7174105734417 35 20.098252783077687 26.77559438259827 33.04258956009929 20.08356327422475 36 22.51530296277378 27.88123031313693 30.691767364919116 18.911699359170175 37 20.560012486082524 29.209504112227847 30.83236098800301 19.398122413686618 38 20.366461514321436 29.911178549310847 29.7456711853599 19.976688751007817 39 20.42146370940145 28.092099881983152 30.047056506200477 21.43937990241492 40 21.335760440818806 26.684285730978335 31.086339257545482 20.893614570657373 41 19.676638840062964 26.391121527308297 31.21787713227402 22.714362500354717 42 20.808482189805147 27.77819509337019 29.617388372252186 21.795934344572476 43 21.00612285437188 27.292314549123887 29.68440925639369 22.017153340110536 44 21.130733290266367 27.671028449238566 30.91344540760883 20.284792852886238 45 20.513356602850767 28.124650498191357 30.132439276408146 21.229553622549734 46 21.71530897211831 27.60137847686486 30.461325694788734 20.221986856228103 47 20.633585225024913 27.36054564848339 31.237240575761977 20.768628550729716 48 20.595150458963687 26.779058102015302 32.090901351601744 20.53489008741927 49 20.71583812828949 25.927942951289257 32.3406230021016 21.015595918319654 50 19.459050490178896 26.95892112234525 32.76419832840066 20.817830059075195 51 19.615919421366893 27.42986176838317 31.850485838812688 21.103732971437253 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1628.0 1 3286.0 2 4944.0 3 52027.0 4 99110.0 5 66867.0 6 34624.0 7 33690.0 8 32756.0 9 32939.0 10 33122.0 11 32655.0 12 32188.0 13 30631.5 14 29075.0 15 27443.0 16 25811.0 17 24432.0 18 23053.0 19 21770.5 20 20488.0 21 20012.5 22 19537.0 23 20316.0 24 21095.0 25 22671.0 26 27329.0 27 30411.0 28 34121.0 29 37831.0 30 41643.5 31 45456.0 32 51414.0 33 57372.0 34 62793.5 35 68215.0 36 74859.0 37 81503.0 38 93123.5 39 104744.0 40 117537.5 41 130331.0 42 141901.0 43 153471.0 44 161945.0 45 170419.0 46 170420.5 47 170422.0 48 164676.0 49 158930.0 50 149984.0 51 141038.0 52 133469.0 53 125900.0 54 118959.0 55 112018.0 56 106509.0 57 101000.0 58 93733.0 59 86466.0 60 77745.0 61 69024.0 62 60125.5 63 51227.0 64 42377.5 65 33528.0 66 27932.0 67 22336.0 68 19250.0 69 16164.0 70 14005.0 71 11846.0 72 9662.5 73 7479.0 74 5676.5 75 2889.5 76 1905.0 77 1431.0 78 957.0 79 707.0 80 457.0 81 302.5 82 148.0 83 103.0 84 58.0 85 42.5 86 27.0 87 19.5 88 12.0 89 9.5 90 7.0 91 6.0 92 5.0 93 5.5 94 6.0 95 3.5 96 1.0 97 1.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2396268.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.277671362483783 #Duplication Level Percentage of deduplicated Percentage of total 1 70.84606622940375 22.15899976848051 2 7.517031364262435 4.702304732657671 3 3.86933440093499 3.63071309351993 4 2.6114157089694565 3.26716009343897 5 1.997151542714766 3.1233124807054966 6 1.6091187421141844 3.0197692319436453 7 1.375567797640032 3.0117190257980355 8 1.1697118138326348 2.9268689361497566 9 0.9979968156955885 2.809351477991872 >10 7.871444558599462 44.130232344996486 >50 0.10608567322553004 2.1045325219669184 >100 0.02488455451297059 1.6552429198008474 >500 0.0032444888471989185 0.6614808310540901 >1k 6.759351764997701E-4 0.231924211092538 >5k 0.0 0.0 >10k+ 2.70374070599908E-4 2.566388330403208 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 38845 1.6210624187277884 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 21850 0.911834569422118 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.2519467772386061E-4 0.0 0.0 0.009765184862461126 0.0 2 1.2519467772386061E-4 0.0 0.0 0.03605606718447185 0.0 3 1.2519467772386061E-4 0.0 0.0 0.062346949506482584 0.0 4 1.2519467772386061E-4 0.0 0.0 0.10203366234494639 0.0 5 1.2519467772386061E-4 0.0 0.0 0.21057744793153355 0.0 6 1.2519467772386061E-4 0.0 0.0 0.3825532035648767 0.0 7 1.2519467772386061E-4 0.0 0.0 0.5058282295636382 0.0 8 1.2519467772386061E-4 0.0 0.0 0.6969587708887319 0.0 9 1.2519467772386061E-4 0.0 0.0 1.0212964493120136 0.0 10 1.2519467772386061E-4 0.0 0.0 1.4522165300375418 0.0 11 1.2519467772386061E-4 0.0 0.0 1.7185890726746758 0.0 12 1.2519467772386061E-4 0.0 0.0 1.9488638165680967 0.0 13 1.2519467772386061E-4 0.0 0.0 2.0655035246474935 0.0 14 1.2519467772386061E-4 0.0 0.0 2.1285181791018366 0.0 15 1.2519467772386061E-4 0.0 0.0 2.1836038373003355 0.0 16 1.2519467772386061E-4 0.0 0.0 2.2626016789440913 0.0 17 1.2519467772386061E-4 0.0 0.0 2.352867041582995 0.0 18 1.2519467772386061E-4 0.0 0.0 2.499219619842188 0.0 19 1.2519467772386061E-4 0.0 0.0 2.5679932294718286 0.0 20 1.2519467772386061E-4 0.0 0.0 2.6478257023004104 0.0 21 1.2519467772386061E-4 0.0 0.0 2.7380910649393138 0.0 22 1.2519467772386061E-4 0.0 0.0 2.8401247272842602 0.0 23 1.2519467772386061E-4 0.0 0.0 2.9509637486291185 0.0 24 1.2519467772386061E-4 0.0 0.0 3.040102359168507 0.0 25 1.2519467772386061E-4 0.0 0.0 3.123189893617909 0.0 26 1.2519467772386061E-4 0.0 0.0 3.202605050854078 0.0 27 1.2519467772386061E-4 0.0 0.0 3.2903665199385044 0.0 28 1.2519467772386061E-4 0.0 0.0 3.383720017961263 0.0 29 1.2519467772386061E-4 0.0 0.0 3.4847103913251773 0.0 30 1.6692623696514748E-4 0.0 0.0 3.607568101731526 0.0 31 1.6692623696514748E-4 0.0 0.0 3.7119804629532256 0.0 32 1.6692623696514748E-4 0.0 0.0 3.8201069329474 0.0 33 1.6692623696514748E-4 0.0 0.0 3.925896435624062 0.0 34 1.6692623696514748E-4 0.0 0.0 4.038571645575536 0.0 35 1.6692623696514748E-4 0.0 0.0 4.171236272403587 0.0 36 1.6692623696514748E-4 0.0 0.0 4.289837363767325 0.0 37 1.6692623696514748E-4 0.0 0.0 4.414906846813461 0.0 38 1.6692623696514748E-4 0.0 0.0 4.56013267297314 0.0 39 1.6692623696514748E-4 0.0 0.0 4.749468757250859 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGTTCG 25 3.8920763E-5 45.000004 1 CGTTTTT 31755 0.0 44.362305 1 GTTTTTA 21715 0.0 42.285286 2 CGTTAGA 155 0.0 40.64516 2 CCGCTCG 230 0.0 40.108692 19 CGACGGT 405 0.0 39.444443 28 ACGTATG 40 3.460318E-7 39.375 1 TTATTTT 24230 0.0 39.038383 6 CACGACG 410 0.0 38.963417 26 TATTTTT 24275 0.0 38.928936 7 CGGTCTA 425 0.0 38.647057 31 TCACGAC 420 0.0 38.035713 25 TTTTATT 24920 0.0 38.020668 4 TTTATTT 24875 0.0 38.00804 5 GTTGCGA 160 0.0 37.96875 2 TTTTTAT 25240 0.0 37.547543 3 GAGCGAT 1385 0.0 37.36462 7 TATGCGA 170 0.0 37.058823 2 GTTACGA 140 0.0 36.964283 2 AGACTTA 1775 0.0 36.633804 8 >>END_MODULE