SRR1546908_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546908_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	551721
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8807	1.5962778288301516	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4949	0.897011351752063	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGCCC	25	3.88816E-5	45.0	31
TCGCAAA	20	7.0300954E-4	45.0	14
CGTATGA	20	7.0300954E-4	45.0	2
TCGATTA	20	7.0300954E-4	45.0	41
CGTTAGC	20	7.0300954E-4	45.0	27
AACGGCG	20	7.0300954E-4	45.0	14
CATACGG	20	7.0300954E-4	45.0	2
CGAGAAT	35	1.2103919E-7	45.0	6
ATAACGC	20	7.0300954E-4	45.0	11
ATCGGTA	25	3.88816E-5	45.0	27
TGATGCG	40	6.8048394E-9	45.0	1
TACGTAG	20	7.0300954E-4	45.0	1
AAATGCG	25	3.88816E-5	45.0	1
ACGGTAG	20	7.0300954E-4	45.0	1
CGTTTTT	6700	0.0	44.0597	1
GTTTTTA	4595	0.0	42.600655	2
TTACGAG	80	0.0	42.1875	3
AGCGATA	60	3.6379788E-12	41.249996	8
TTAAGCA	175	0.0	41.142857	45
TATTTTT	5010	0.0	40.01497	7